PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041651t1
Common NameTCM_041651
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 571aa    MW: 64350.3 Da    PI: 9.1207
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041651t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.5e-17231277148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT +Ed +l+++vkq+G + W+ Ia+ +  gR +kqc++rw+++l
  Thecc1EG041651t1 231 KGQWTDDEDRKLIRLVKQYGVRKWAQIAENLV-GRAGKQCRERWHNHL 277
                       799*****************************.*************97 PP
2Myb_DNA-binding52.79.6e-17283325145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       +++W++eE+  lv+a+++ G++ W+ Ia+ ++ gRt++ +k++w+
  Thecc1EG041651t1 283 KDSWSEEEERVLVEAHAKVGNR-WAEIAKFIP-GRTENAIKNHWN 325
                       679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.572226281IPR017930Myb domain
SuperFamilySSF466893.95E-30229324IPR009057Homeodomain-like
SMARTSM007178.4E-17230279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-26232285IPR009057Homeodomain-like
PfamPF139212.3E-19234291No hitNo description
CDDcd001673.94E-15234277No hitNo description
SMARTSM007179.6E-17282330IPR001005SANT/Myb domain
PROSITE profilePS5129421.041282332IPR017930Myb domain
CDDcd001678.49E-13285328No hitNo description
Gene3DG3DSA:1.10.10.601.1E-20286330IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MGTKIIYRVL IEEEDIHRIL IEKKNYKMLC EKVNITKGVV EELQPQGILN RWIDHQLINS  60
NFAMWLLPRL AKEERKNKRK KEKNSYLIFF PVLILLRYLF MEEGGGGFGY GNLLSRSSVY  120
KPSPPLSAID RFLWGHNHSK ISKGTVGSTD GLLRGFSFSS DEIGGYVAGV SWQSNLDESF  180
VDGLFIDGGS FALTGDKNPN METKEVQVSM KSFPKGVGKR NKKVASAALI KGQWTDDEDR  240
KLIRLVKQYG VRKWAQIAEN LVGRAGKQCR ERWHNHLRPD IKKDSWSEEE ERVLVEAHAK  300
VGNRWAEIAK FIPGRTENAI KNHWNATKRR QNSRKKNKQN DNQNGKPQPS ILQDYIKSRN  360
LNSNNRSATS ITPSNSSTTS TTPSSSPFSE DLSSQSKYFL PDQPSESNDS QPLITQTYDE  420
ELLFMQNFFA NNNNIQPCID YSLTKGLTEV KSVLVDNVSK GPSTIDCSGF NCQVNGVQQC  480
NPADPFGFSS SITDPNSLTS SLQEQEPRTT YLFSDLYLSR LLNGSATTSS FSADYGYTNM  540
NTDLQAEQAS SHGRKEMDLI EMVSSSQFFR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-4622033147158MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-4622033147158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17481RKNKRKKE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279192.10.0LOW QUALITY PROTEIN: transcription factor MYB106-like
TrEMBLA0A061GX600.0A0A061GX60_THECC; Myb domain protein 64, putative
STRINGEOY337670.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-74myb domain protein 119
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]