PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG041587t1

Common Name

TCM_041587

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 317aa MW: 33149.8 Da PI: 6.6226

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG041587t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H Thecc1EG041587t1 134 YECKTCNRSFPSFQALGGHRASH 156 99**********99999998887 PP
2	zf-C2H2	13.2	0.00027	209	231	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Thecc1EG041587t1 209 HECSICGSEFTSGQALGGHMRRH 231 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.03E-8	133	156	No hit	No description
Pfam	PF13912	4.6E-13	134	158	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.06	134	156	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.512	134	161	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	136	156	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.03E-8	204	231	No hit	No description
Pfam	PF13912	2.0E-11	209	233	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.019	209	231	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.993	209	236	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	211	231	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MQAQEEFVGS NDQALIMKGK RTKRQRSASP FGVAVTSSSS SASGGGNSGG PGAAAGGGGG 60 GVVEEYNSIS SPTTSSEIYE STEEEEDMAN CLIMLAQSDG PKRDMEEKVK IEKFGTRKFS 120 EIATTTNKAG FYIYECKTCN RSFPSFQALG GHRASHKKPK GATAEEKKPL ALAVKGDVEE 180 GQFNRESPVL ALQVSNNNKA CHGNKGKIHE CSICGSEFTS GQALGGHMRR HRAAAAAAAA 240 AAAAASNPAG MTMSADTTST TIDSSNGDDI KPRNILSLDL NLPAPEDDLR DSKFQFGAVP 300 QQAIVFSTPA LVDCHY*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in stress responses. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269\|PubMed:12837949, ECO:0000269\|PubMed:16244149}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007016063.2	0.0	PREDICTED: zinc finger protein ZAT5
Swissprot	Q681X4	3e-76	ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBL	A0A061GX09	0.0	A0A061GX09_THECC; C2H2-type zinc finger family protein, putative
STRING	EOY33682	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5862	27	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	1e-61	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG041587t1
Entrez Gene	18590465

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]