PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG041585t1 | ||||||||
Common Name | TCM_041585 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C2H2 | ||||||||
Protein Properties | Length: 404aa MW: 44696.5 Da PI: 8.218 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.3 | 3.4e-07 | 231 | 253 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cgk F+r nL+ H+r H Thecc1EG041585t1 231 HYCQVCGKGFKRDANLRMHMRAH 253 68*******************99 PP | |||||||
2 | zf-C2H2 | 10.6 | 0.0018 | 326 | 349 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ k Fs s+L++H + + Thecc1EG041585t1 326 YVCKRCNsKQFSVLSDLRTHEKHC 349 9*******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.71E-6 | 229 | 257 | No hit | No description |
SMART | SM00355 | 0.0034 | 231 | 253 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-6 | 231 | 257 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 12.653 | 231 | 258 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 233 | 253 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 60 | 288 | 321 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 20 | 326 | 348 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MISGATSCFS NASECLPMYS VAEDMVPSSL EAGSGPEAHS SSLLYNLAIL KDKVHQVQSL 60 VSILIAPDQT NPESTSLAIA SMGSLVQEII VTASSMIFIC QQMSLGTTSA GNSNSTTDQV 120 HQQHVRVPDN NGISQQPNFS HDNCVGNIVQ ERGKGFYSST ETITWYSDHC NNRNYNNNSS 180 RSLQVSNDDK LEIRKELPRR SEISEGSQGI SMKNYDIVEV DAADLLAKYT HYCQVCGKGF 240 KRDANLRMHM RAHGDEYKTS AALTNPMKIH HEGSATGSNC STNLPKKFSC PQEGCRWNQK 300 HAKFQPLKSM ICMKNHYKRS HCPKMYVCKR CNSKQFSVLS DLRTHEKHCG DLKWQCSCGT 360 TFSRKDKLMG HVALFVGHSP VVTPLTKPAK LELQATSMQL DDR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00522 | DAP | Transfer from AT5G22890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007016060.2 | 0.0 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
Swissprot | Q0WT24 | 1e-111 | STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2 | ||||
TrEMBL | A0A061GZV2 | 0.0 | A0A061GZV2_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative | ||||
STRING | EOY33679 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5752 | 25 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22890.1 | 1e-111 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG041585t1 |
Entrez Gene | 18590463 |
Publications ? help Back to Top | |||
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