PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG041581t1 | ||||||||
Common Name | TCM_041581 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | GeBP | ||||||||
Protein Properties | Length: 230aa MW: 26505.8 Da PI: 10.9988 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 54.2 | 4.2e-17 | 14 | 104 | 3 | 98 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 + r++se+Dei +L+ li +++ + ++ ++ + k+++ k++ sq+ +K+rrL+ K++k+ + + ++++hd+ if+lsk+i Thecc1EG041581t1 14 SARVFSESDEIQILKCLIRATKSIPPPITTVGTRTINRIIKRLNYKFTPSQINDKVRRLRLKYHKHARS-----KSLVRTHHDRRIFKLSKRI 101 689***************99777776556667889999999************************9999.....6678999************ PP DUF573 96 Wgs 98 Wg+ Thecc1EG041581t1 102 WGK 104 *95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 8.6E-17 | 15 | 103 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MATSPPSTTP NGRSARVFSE SDEIQILKCL IRATKSIPPP ITTVGTRTIN RIIKRLNYKF 60 TPSQINDKVR RLRLKYHKHA RSKSLVRTHH DRRIFKLSKR IWGKKISATN NEKVEEEMGS 120 GERNWVRSLE KFPYLVAEFS RVLPENEVWK ERMKGLEEEK LRKMDQEWIF IKVEEAKLVA 180 KKADLMQQQI MEIMGETVSA NGVSSPFFQG GSSFRIQTRK KGFTLTPSA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017984018.1 | 1e-148 | PREDICTED: uncharacterized protein LOC18590459 | ||||
TrEMBL | A0A061GV42 | 1e-167 | A0A061GV42_THECC; Uncharacterized protein | ||||
STRING | EOY33675 | 1e-168 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17149 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 6e-09 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG041581t1 |
Entrez Gene | 18590459 |
Publications ? help Back to Top | |||
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