PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041581t1
Common NameTCM_041581
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GeBP
Protein Properties Length: 230aa    MW: 26505.8 Da    PI: 10.9988
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041581t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57354.24.2e-1714104398
            DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                       + r++se+Dei +L+ li  +++     +   ++ ++ + k+++ k++ sq+ +K+rrL+ K++k+ +      +  ++++hd+ if+lsk+i
  Thecc1EG041581t1  14 SARVFSESDEIQILKCLIRATKSIPPPITTVGTRTINRIIKRLNYKFTPSQINDKVRRLRLKYHKHARS-----KSLVRTHHDRRIFKLSKRI 101
                       689***************99777776556667889999999************************9999.....6678999************ PP

            DUF573  96 Wgs 98 
                       Wg+
  Thecc1EG041581t1 102 WGK 104
                       *95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045048.6E-1715103IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MATSPPSTTP NGRSARVFSE SDEIQILKCL IRATKSIPPP ITTVGTRTIN RIIKRLNYKF  60
TPSQINDKVR RLRLKYHKHA RSKSLVRTHH DRRIFKLSKR IWGKKISATN NEKVEEEMGS  120
GERNWVRSLE KFPYLVAEFS RVLPENEVWK ERMKGLEEEK LRKMDQEWIF IKVEEAKLVA  180
KKADLMQQQI MEIMGETVSA NGVSSPFFQG GSSFRIQTRK KGFTLTPSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017984018.11e-148PREDICTED: uncharacterized protein LOC18590459
TrEMBLA0A061GV421e-167A0A061GV42_THECC; Uncharacterized protein
STRINGEOY336751e-168(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17149810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.16e-09DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]