PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG041572t2

Common Name

TCM_041572

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 710aa MW: 81061.4 Da PI: 4.792

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG041572t2	genome	CGD	View CDS

Signature Domain? help Back to Top

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence Send to blast
MSPNESTQQL NSQRQIDVEV EAGSVARNED SICSWRPFSP VMSPNEMNHS LNSIFENLIA 60 EQQLKGPENF EVETSSVAQT KDFSPIWISF VTDMLPPGEG KPNEVPQQIN SPDQQLNSLA 120 ENLTADLRSN SQRDVEVGLR CLQPNRSHLD HEERPSDQAS NGRKQRGRKP RVTPVDTAKI 180 QLDQAGASAE ACNGQKRIRT EEQENERKRK KNESDRKYRA DVRNELKELR KIKPVYDTLM 240 TIASSFGGID QLESLINGMN SDIHKLQEKE VEYDMFQQGI EIPDRVPSMR ANEVQVCGIE 300 EMKSLSDKFK AECHRLQLLK SKYGEIEDIE SMLDKFKNME AESQRLEHIK MLFGGIDEIE 360 LEIRRLQNME LQLERHKQMV NQKELDSFQA SPGSLQQLEL DHCYRLQKEA DLDRFEQLKS 420 KFGGTEELEF KLDKFHWMEA ELHKLEQIKS EFGGVDEMEA EIYRLKEIES QHDKQKELQF 480 FPESPGSLQE ELGAQSLDLN GSSDAVSADG ISLMSPAAVR GTNTMHDMQY SDVLVTKFMA 540 KLDDDSVVGN VDRSSFKDLD GEPKKVGQYC LPPSLVSTAE DIIKAYGDIT KKCKFSPRII 600 EDIYVLFCAA IKEMGDLSLE QVTEEVMLKW RDAITDADRS ACDVEFAMKH LEKIAYGYFG 660 LKAYNDRNSL KQRMTILKAE EEVLRKELEK KANEMKAVKA KEGDLTSKRC

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence Send to blast

MSPNESTQQL NSQRQIDVEV EAGSVARNED SICSWRPFSP VMSPNEMNHS LNSIFENLIA  60
EQQLKGPENF EVETSSVAQT KDFSPIWISF VTDMLPPGEG KPNEVPQQIN SPDQQLNSLA  120
ENLTADLRSN SQRDVEVGLR CLQPNRSHLD HEERPSDQAS NGRKQRGRKP RVTPVDTAKI  180
QLDQAGASAE ACNGQKRIRT EEQENERKRK KNESDRKYRA DVRNELKELR KIKPVYDTLM  240
TIASSFGGID QLESLINGMN SDIHKLQEKE VEYDMFQQGI EIPDRVPSMR ANEVQVCGIE  300
EMKSLSDKFK AECHRLQLLK SKYGEIEDIE SMLDKFKNME AESQRLEHIK MLFGGIDEIE  360
LEIRRLQNME LQLERHKQMV NQKELDSFQA SPGSLQQLEL DHCYRLQKEA DLDRFEQLKS  420
KFGGTEELEF KLDKFHWMEA ELHKLEQIKS EFGGVDEMEA EIYRLKEIES QHDKQKELQF  480
FPESPGSLQE ELGAQSLDLN GSSDAVSADG ISLMSPAAVR GTNTMHDMQY SDVLVTKFMA  540
KLDDDSVVGN VDRSSFKDLD GEPKKVGQYC LPPSLVSTAE DIIKAYGDIT KKCKFSPRII  600
EDIYVLFCAA IKEMGDLSLE QVTEEVMLKW RDAITDADRS ACDVEFAMKH LEKIAYGYFG  660
LKAYNDRNSL KQRMTILKAE EEVLRKELEK KANEMKAVKA KEGDLTSKRC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	210	RKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007016051.2	0.0	PREDICTED: uncharacterized protein LOC18590454 isoform X2
TrEMBL	A0A061GV37	0.0	A0A061GV37_THECC; Uncharacterized protein isoform 2 (Fragment)
STRING	EOY33669	0.0	(Theobroma cacao)

Link Out ? help Back to Top
Phytozome	Thecc1EG041572t2
Entrez Gene	18590454

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]