PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG041572t1

Common Name

TCM_041572

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 732aa MW: 83550.2 Da PI: 4.7565

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG041572t1	genome	CGD	View CDS

Signature Domain? help Back to Top

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
MSPNESTQQL NSQRQIDVEV EAGSVARNED SICSWRPFSP VMSPNEMNHS LNSIFENLIA 60 EQQLKGPENF EVETSSVAQT KDFSPIWISF VTDMLPPGEG KPNEVPQQIN SPDQQLNSLA 120 ENLTADLRSN SQRDVEVGLR CLQPNRSHLD HEERPSDQAS NGRKQRGRKP RVTPVDTAKI 180 QLDQAGASAE ACNGQKRIRT EEQENERKRK KNESDRKYRA DVRNELKELR KIKPVYDTLM 240 TIASSFGGID QLESLINGMN SDIHKLQEKE VEYDMFQQGI EIPDRVPSMR ANEVQVCGIE 300 EMKSLSDKFK EMQAECHRLQ LLKSKYGEIE DIESMLDKFK NMEAESQRLE HIKMLFGGID 360 EIELEIRRLQ NMELQLERHK QMVNQKELDS FQASPGSLQQ LELDHCYRLQ KEADLDRFEQ 420 LKSKFGGTEE LEFKLDKFHW MEAELHKLEQ IKSEFGGVDE MEAEIYRLKE IESQHDKQKE 480 LQFFPESPGS LQEELGAQSL DLNGSSDAVS ADGISLMSPA AVRGTNTMHD MQYSDVLVTK 540 FMAKLDDDSV VGNVDRSSFK DLDGEPKKVG QYCLPPSLVS TAEDIIKAYG DITKKCKFSP 600 RIIEDIYVLF CAAIKEMGDL SLEQVTEEVM LKWRDAITDA DRSACDVEFA MKHLEKIAYG 660 YFGLKAYNDR NSLKQRMTIL KAEEEVLRKE LEKKANEMKA VKAKEGDLTS KRCKVCQEFA 720 DQFLDKTISV F*

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

MSPNESTQQL NSQRQIDVEV EAGSVARNED SICSWRPFSP VMSPNEMNHS LNSIFENLIA  60
EQQLKGPENF EVETSSVAQT KDFSPIWISF VTDMLPPGEG KPNEVPQQIN SPDQQLNSLA  120
ENLTADLRSN SQRDVEVGLR CLQPNRSHLD HEERPSDQAS NGRKQRGRKP RVTPVDTAKI  180
QLDQAGASAE ACNGQKRIRT EEQENERKRK KNESDRKYRA DVRNELKELR KIKPVYDTLM  240
TIASSFGGID QLESLINGMN SDIHKLQEKE VEYDMFQQGI EIPDRVPSMR ANEVQVCGIE  300
EMKSLSDKFK EMQAECHRLQ LLKSKYGEIE DIESMLDKFK NMEAESQRLE HIKMLFGGID  360
EIELEIRRLQ NMELQLERHK QMVNQKELDS FQASPGSLQQ LELDHCYRLQ KEADLDRFEQ  420
LKSKFGGTEE LEFKLDKFHW MEAELHKLEQ IKSEFGGVDE MEAEIYRLKE IESQHDKQKE  480
LQFFPESPGS LQEELGAQSL DLNGSSDAVS ADGISLMSPA AVRGTNTMHD MQYSDVLVTK  540
FMAKLDDDSV VGNVDRSSFK DLDGEPKKVG QYCLPPSLVS TAEDIIKAYG DITKKCKFSP  600
RIIEDIYVLF CAAIKEMGDL SLEQVTEEVM LKWRDAITDA DRSACDVEFA MKHLEKIAYG  660
YFGLKAYNDR NSLKQRMTIL KAEEEVLRKE LEKKANEMKA VKAKEGDLTS KRCKVCQEFA  720
DQFLDKTISV F*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	206	210	RKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007016050.2	0.0	PREDICTED: uncharacterized protein LOC18590454 isoform X1
TrEMBL	A0A061GZV0	0.0	A0A061GZV0_THECC; Uncharacterized protein isoform 1
STRING	EOY33669	0.0	(Theobroma cacao)

Link Out ? help Back to Top
Phytozome	Thecc1EG041572t1
Entrez Gene	18590454

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]