PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041517t3
Common NameTCM_041517
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 292aa    MW: 31138.7 Da    PI: 4.6029
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041517t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05265288123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       ++C+ C+ksF +   L++H +  H
  Thecc1EG041517t3 265 FSCGSCNKSFGSEGGLESHKKAkH 288
                       89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.863265291IPR007087Zinc finger, C2H2
PROSITE patternPS000280267288IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEFWGVEVKA GKPIKADPGA NHVIHLSQAT LGESKNKAES VTLHVNADGQ KLVLGTLSHQ  60
NFPQLSFDLV FDQEFELSHN WKNGSVYFLG YKTFVPDEGY PFLNMSSDEE SSEDEELPVA  120
AAENGKAKTD VKTSKANAGK PDAVKQAVKI EEPSNNKKTE GDDDESDSED ESGSDEEDDS  180
EDEDESDEMS MDESSDDEDE ETPKKVEASK KRPAEAATPV SAKKAKSAAT PQKTDGKKGG  240
HTATPHPSKQ AGKSSAKSPK SGGQFSCGSC NKSFGSEGGL ESHKKAKHGG K*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007015954.21e-163PREDICTED: histone deacetylase HDT1
SwissprotQ6V9I62e-69HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A061GZT10.0A0A061GZT1_THECC; Histone deacetylase 2C, putative isoform 3
STRINGEOY335740.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.29e-38histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]