PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041421t2
Common NameTCM_041421
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 502aa    MW: 56049.8 Da    PI: 7.5964
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041421t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.77.8e-11197238445
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                        k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L
  Thecc1EG041421t2 197 AKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLTQLEQDL 238
                       6889*************************9877777766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.5E-9194261IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.14196240IPR004827Basic-leucine zipper domain
PfamPF001705.5E-8197239IPR004827Basic-leucine zipper domain
CDDcd147089.10E-22198250No hitNo description
SuperFamilySSF579596.82E-7198241No hitNo description
Gene3DG3DSA:1.20.5.1707.0E-8199242No hitNo description
PROSITE patternPS000360201216IPR004827Basic-leucine zipper domain
PfamPF141444.1E-31279354IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MANHRVGETG LSDSGPSNHH HHIPYAVLHG MNAPTSFIHQ EGSAFDFGEL EEAIVLQGVK  60
IRNDEAKGPL FTTGRPAATL EMFPSWPIRF QQTPRGSSKS GGESTDSGSA VNTLSSKTEN  120
QLEPESPISK KASSSDHQAF DQKPLQHQQH LQQHQQQQQQ RLEMASDTSR TGISQNQSAK  180
PTQEKRRGST SEKQLDAKTL RRLAQNREAA RKSRLRKKAY VQQLETSRIK LTQLEQDLQR  240
ARSQGVFLGG CSATVGNISS GAAIFDMEYS RWLEDDQRHM SELRTGLHAH LSDSDLRVIV  300
EGYISHYDEI FRLKGVAAKT DVFHLITGMW TTQAERCFLW MGGFRPSELI KMLISQLDPL  360
TEQQVMGIYS LQHSSQQAEE ALTQGLEQLQ QSLIDTVAGG PGIDAMQQMA VALGKLANLE  420
GFVRQADNLR QQTLHQLPRI LTVRQAARCF LVIGEYYGRL RALSSLWASR PRESLMSDDH  480
SCQTTTDLHM VQPSQNHFSN F*
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5872292e-54JX587229.1 Gossypium hirsutum clone NBRI_GE21263 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007015830.20.0PREDICTED: transcription factor TGA2
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLA0A061GZQ60.0A0A061GZQ6_THECC; BZIP transcription factor family protein isoform 1
STRINGEOY334490.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.30.0bZIP family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  3. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]