PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG041421t1 | ||||||||
Common Name | TCM_041421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bZIP | ||||||||
Protein Properties | Length: 502aa MW: 56049.8 Da PI: 7.5964 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 33.7 | 7.8e-11 | 197 | 238 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L Thecc1EG041421t1 197 AKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLTQLEQDL 238 6889*************************9877777766665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.5E-9 | 194 | 261 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.14 | 196 | 240 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.5E-8 | 197 | 239 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 9.10E-22 | 198 | 250 | No hit | No description |
SuperFamily | SSF57959 | 6.82E-7 | 198 | 241 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 7.0E-8 | 199 | 242 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 201 | 216 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 4.1E-31 | 279 | 354 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 502 aa Download sequence Send to blast |
MANHRVGETG LSDSGPSNHH HHIPYAVLHG MNAPTSFIHQ EGSAFDFGEL EEAIVLQGVK 60 IRNDEAKGPL FTTGRPAATL EMFPSWPIRF QQTPRGSSKS GGESTDSGSA VNTLSSKTEN 120 QLEPESPISK KASSSDHQAF DQKPLQHQQH LQQHQQQQQQ RLEMASDTSR TGISQNQSAK 180 PTQEKRRGST SEKQLDAKTL RRLAQNREAA RKSRLRKKAY VQQLETSRIK LTQLEQDLQR 240 ARSQGVFLGG CSATVGNISS GAAIFDMEYS RWLEDDQRHM SELRTGLHAH LSDSDLRVIV 300 EGYISHYDEI FRLKGVAAKT DVFHLITGMW TTQAERCFLW MGGFRPSELI KMLISQLDPL 360 TEQQVMGIYS LQHSSQQAEE ALTQGLEQLQ QSLIDTVAGG PGIDAMQQMA VALGKLANLE 420 GFVRQADNLR QQTLHQLPRI LTVRQAARCF LVIGEYYGRL RALSSLWASR PRESLMSDDH 480 SCQTTTDLHM VQPSQNHFSN F* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX587229 | 2e-54 | JX587229.1 Gossypium hirsutum clone NBRI_GE21263 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007015830.2 | 0.0 | PREDICTED: transcription factor TGA2 | ||||
Swissprot | Q93XM6 | 0.0 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | A0A061GZQ6 | 0.0 | A0A061GZQ6_THECC; BZIP transcription factor family protein isoform 1 | ||||
STRING | EOY33449 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5524 | 24 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 0.0 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG041421t1 |
Entrez Gene | 18590325 |
Publications ? help Back to Top | |||
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