PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG041398t1 | ||||||||
Common Name | TCM_041398 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NF-YB | ||||||||
Protein Properties | Length: 162aa MW: 18231.2 Da PI: 4.7967 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 45.5 | 1.8e-14 | 9 | 102 | 6 | 94 |
NF-YB 6 rflPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 ++lP a v r++k l + + kda e + fi ++++ a+d c++ +r+tin++d++ al ++ f ++v+pl++ l+++r Thecc1EG041398t1 9 EELPKAIVRRVVKDKLSDcspdyDINVHKDALLAFTESARIFIHYLSATANDICKESRRQTINAEDVFKALEEIEFSEFVKPLRASLAEFRRK 101 5799999*****9999652222256899**************************************************************986 PP NF-YB 94 e 94 + Thecc1EG041398t1 102 N 102 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.0E-32 | 7 | 156 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-10 | 10 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 2.92E-23 | 11 | 152 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MEKAVPEAEE LPKAIVRRVV KDKLSDCSPD YDINVHKDAL LAFTESARIF IHYLSATAND 60 ICKESRRQTI NAEDVFKALE EIEFSEFVKP LRASLAEFRR KNAGKKGGAT KEKEVKKKRK 120 VEEPSGKSGS KSKQNKGEDD NEEEREEGEE EAEEDENNGN E* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 119 | RRKNAGKKGGATKEKEVKKKRK |
2 | 110 | 119 | KEKEVKKKRK |
3 | 115 | 120 | KKKRKV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007015804.2 | 1e-111 | PREDICTED: DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A061GVH6 | 1e-110 | A0A061GVH6_THECC; Nuclear factor Y | ||||
STRING | EOY33423 | 1e-111 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12007 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 1e-46 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG041398t1 |
Entrez Gene | 18590310 |
Publications ? help Back to Top | |||
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