PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG041105t1

Common Name

TCM_041105

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Dof

Protein Properties

Length: 298aa MW: 32744.3 Da PI: 6.871

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG041105t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	129	1.3e-40	36	97	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+alkcprCdstntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+sss Thecc1EG041105t1 36 PEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSS 97 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.5E-34	38	94	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-24	39	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.646	40	94	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	42	78	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MDPSSGQHQE MPNPSLENML VCTSRGQQER KPRPQPEQAL KCPRCDSTNT KFCYYNNYSL 60 SQPRYFCKSC RRYWTKGGTL RNVPVGGGCR KNKRSSSSSS KRSQDQPLTP NTNPLTSLPP 120 LSYDTNDLSL AFARLQKQSS GQLGFDDHDL SILGNPTNTQ CDILGNPNTS SAANPAFLDA 180 LRSGFLGTQN HFQNFYYGFG NENMGEVDNG GGSVGVSGEM MLPYSEEMSN IATTTAVTVT 240 TMKQELCNGR ESENRVLWGL PWQLNGDGNN MGDLDSGRES WNGLNPTWHG LLNSPLM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF351547	6e-72	AF351547.1 Gossypium hirsutum clone JESPR310 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007015499.2	0.0	PREDICTED: dof zinc finger protein DOF2.1
TrEMBL	A0A061GUM7	0.0	A0A061GUM7_THECC; DOF domain class transcription factor, putative
STRING	EOY33118	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6960	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28510.1	1e-43	Dof family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG041105t1
Entrez Gene	18590106

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]