PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG041055t1

Common Name

TCM_041055

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 400aa MW: 45755.9 Da PI: 8.43

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG041055t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166	1.3e-51	63	189	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrFhP+deel+ +yL++kv++++l++ +vi+e+d+yk++Pw+Lpkk+ +e+ewyfFs+rd+ky++g+r+nra++sgyWkatg+dk++l+ Thecc1EG041055t1 63 PPGFRFHPSDEELIIHYLQNKVTSRPLPA-SVIAEIDLYKYNPWELPKKALFGEDEWYFFSPRDRKYPNGERPNRAAASGYWKATGTDKPILT 154 9**************************.99***********88888999********************************99 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++++g+kk Lvfy+g+ pkg+kt+W+m eyrl Thecc1EG041055t1 155 SsGSKNIGVKKALVFYTGKPPKGVKTEWIMSEYRL 189 868889*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.14E-61	58	216	IPR003441	NAC domain
PROSITE profile	PS51005	59.063	62	216	IPR003441	NAC domain
Pfam	PF02365	2.2E-26	63	189	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MSNYIHSKQT LEKKTQGPNK EPQRLVILLV LLHFPCLSTI SYGKNEQKSI SMEREPNLNF 60 HFPPGFRFHP SDEELIIHYL QNKVTSRPLP ASVIAEIDLY KYNPWELPKK ALFGEDEWYF 120 FSPRDRKYPN GERPNRAAAS GYWKATGTDK PILTSSGSKN IGVKKALVFY TGKPPKGVKT 180 EWIMSEYRLL KTIIKPSRLK GSMRLDDWVL CRVRKKGNIT KNTFEVQDSC STELMRYSPT 240 IEELHPTFTD CRTDMITNCL NQDCQVLALL LASQALSPME TNSTATFHGS NESNSFISVY 300 EEGSDKVNLP TLNPSLDNYF NPLTRKLSLG NREENLLPSD KKLNNDKRNE DFLPMKILSK 360 NDMNYSSQNQ SQDGIYNPCP SDSIIEFQDL NNWPSHTYS*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MSNYIHSKQT LEKKTQGPNK EPQRLVILLV LLHFPCLSTI SYGKNEQKSI SMEREPNLNF  60
HFPPGFRFHP SDEELIIHYL QNKVTSRPLP ASVIAEIDLY KYNPWELPKK ALFGEDEWYF  120
FSPRDRKYPN GERPNRAAAS GYWKATGTDK PILTSSGSKN IGVKKALVFY TGKPPKGVKT  180
EWIMSEYRLL KTIIKPSRLK GSMRLDDWVL CRVRKKGNIT KNTFEVQDSC STELMRYSPT  240
IEELHPTFTD CRTDMITNCL NQDCQVLALL LASQALSPME TNSTATFHGS NESNSFISVY  300
EEGSDKVNLP TLNPSLDNYF NPLTRKLSLG NREENLLPSD KKLNNDKRNE DFLPMKILSK  360
NDMNYSSQNQ SQDGIYNPCP SDSIIEFQDL NNWPSHTYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-70	53	216	8	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-70	53	216	8	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-70	53	216	8	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-70	53	216	8	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-70	53	216	11	168	NAC domain-containing protein 19
3swm_B	2e-70	53	216	11	168	NAC domain-containing protein 19
3swm_C	2e-70	53	216	11	168	NAC domain-containing protein 19
3swm_D	2e-70	53	216	11	168	NAC domain-containing protein 19
3swp_A	2e-70	53	216	11	168	NAC domain-containing protein 19
3swp_B	2e-70	53	216	11	168	NAC domain-containing protein 19
3swp_C	2e-70	53	216	11	168	NAC domain-containing protein 19
3swp_D	2e-70	53	216	11	168	NAC domain-containing protein 19
4dul_A	2e-70	53	216	8	165	NAC domain-containing protein 19
4dul_B	2e-70	53	216	8	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021278986.1	0.0	NAC domain-containing protein 19-like
TrEMBL	A0A061GT65	0.0	A0A061GT65_THECC; NAC domain containing protein 25, putative
STRING	EOY33050	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17984	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	3e-82	NAC domain containing protein 25

Link Out ? help Back to Top
Phytozome	Thecc1EG041055t1
Entrez Gene	18590072

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]