PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG041051t1 | ||||||||
Common Name | TCM_041051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NF-YC | ||||||||
Protein Properties | Length: 225aa MW: 25614.8 Da PI: 10.0188 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 41 | 4.1e-13 | 116 | 206 | 9 | 99 |
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 + e++++ k ++P+ rik+i+k+++ i ++ l+ ka e f+ ++ + + + ++++l ++++v + +dfl d vp++ Thecc1EG041051t1 116 EEEEEEEAKMCRFPMNRIKRIMKSEDSRVAIPQDVVFLVNKATEKFLEQFCEDGYKSSVKDRKKSLSYKHLSTVVHERRRYDFLSDYVPEK 206 5688889999******************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 1.2E-14 | 127 | 190 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.3E-20 | 128 | 205 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.64E-15 | 137 | 206 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MASSKKPTEE ENKKKKKKSN SSPAKETKTA LKKPDKKAST TEKANKSKPK PKPKPKPDSN 60 KNKSSNGTLV ESEVIAVPSS STDTKEQEDE NKTNKNVKSN KRKQKEKVEE NEGEEEEEEE 120 EEAKMCRFPM NRIKRIMKSE DSRVAIPQDV VFLVNKATEK FLEQFCEDGY KSSVKDRKKS 180 LSYKHLSTVV HERRRYDFLS DYVPEKIKAE DALKERNLTE TGAG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007015427.2 | 1e-116 | PREDICTED: DNA polymerase epsilon subunit C | ||||
TrEMBL | A0A061GU64 | 1e-156 | A0A061GU64_THECC; Nuclear factor Y, putative | ||||
STRING | EOY33046 | 1e-157 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11190 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-37 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG041051t1 |
Entrez Gene | 18590069 |
Publications ? help Back to Top | |||
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