PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG040962t1

Common Name

TCM_040962

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YC

Protein Properties

Length: 278aa MW: 30919.3 Da PI: 4.985

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG040962t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	55.6	1.2e-17	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + rt++ ++++v + fdfl +iv + Thecc1EG040962t1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYEITLMRGARTMNSLHLKQCVRAFNDFDFLGEIVGK 86 5789***********************************************************************999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.4E-26	3	72	IPR009072	Histone-fold
SuperFamily	SSF47113	4.01E-19	4	88	IPR009072	Histone-fold
Pfam	PF00808	2.2E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YEITLMRGAR 60 TMNSLHLKQC VRAFNDFDFL GEIVGKVPDL GGSDAAGNDH SGAKRRKVVD DDDNASGDES 120 KRRRIHETSH FTSCGRGRGR GRGRGRGRGS KTAERETATH CEKFEDDPDI SHCQEKHTLS 180 IQRLDDREEP DELKNHNSAG KNVEAPVGSF DLNVDLNENR DSTISVAPAS PITDSIPEKQ 240 EEYPGYSFSE IEKMAIDPIE LANLNRGIDE EDYDEEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	3e-23	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	123	RRKVVDDDDNASGDESKRRR
2	120	124	KRRRI
3	137	147	RGRGRGRGRGR
4	139	148	RGRGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007015328.1	0.0	PREDICTED: dr1-associated corepressor
TrEMBL	A0A061GUT3	0.0	A0A061GUT3_THECC; Histone superfamily protein, putative
STRING	EOY32947	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13968	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	3e-61	NF-YC family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG040962t1
Entrez Gene	18590010

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]