PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG040941t4 | ||||||||
Common Name | TCM_040941 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 255aa MW: 26784.7 Da PI: 9.8358 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 144.4 | 9.4e-45 | 134 | 255 | 4 | 118 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 +++CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWv+aa+rrerq + aaa++ a +s +++ +k++r +++++++s+t++s++++ Thecc1EG040941t4 134 SGTTCQDCGNQAKKDCTHRRCRTCCKSRGFDCPTHVKSTWVSAARRRERQLMVAAATAGAGSSGSTSGAKKPRLI-TSQTTTTSHTSTSNTTP 225 5679*********************************************************999********986.88899999********* PP DUF702 97 kkeletss........lPeevsseavfrcv 118 +++++tss lP +v+++avf+cv Thecc1EG040941t4 226 PRSFDTSSshqgfkesLPGQVRAPAVFKCV 255 ******999********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.7E-38 | 135 | 255 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 4.9E-27 | 137 | 179 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MGMVGLRDVF VVAPASSFNH HHHHHHHHTQ DPIMANDQIN GQNAATALGV GVIPLLTATP 60 CLASQNVEDS DLLSNNGRNK LSGMQLWQNQ NSSSHYLKKP SSVPDNNNSS SMNLIQSSGG 120 GGMGGGSGGS GSSSGTTCQD CGNQAKKDCT HRRCRTCCKS RGFDCPTHVK STWVSAARRR 180 ERQLMVAAAT AGAGSSGSTS GAKKPRLITS QTTTTSHTST SNTTPPRSFD TSSSHQGFKE 240 SLPGQVRAPA VFKCV |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007015295.2 | 1e-129 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 | ||||
Swissprot | Q94CK9 | 1e-57 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A061GSS5 | 0.0 | A0A061GSS5_THECC; Lateral root primordium protein-related isoform 4 (Fragment) | ||||
STRING | EOY32912 | 1e-134 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12330.2 | 1e-48 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG040941t4 |
Entrez Gene | 18589994 |
Publications ? help Back to Top | |||
---|---|---|---|
|