PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG040898t1
Common NameTCM_040898
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 409aa    MW: 45202.2 Da    PI: 7.6036
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG040898t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000284162223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      +C +C++ F++   L  H+r H
  Thecc1EG040898t1 41 VCRYCHREFKSAKALGGHLRIH 62
                      6*******************99 PP
2zf-C2H214.30.0001299121123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C  C+  Fs+  +L +H+r+H
  Thecc1EG040898t1  99 FTCFVCDDGFSSLKLLCQHMRNH 121
                       89********************9 PP
3zf-C2H210.90.0015313332120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C++Cgk+F +   L  H 
  Thecc1EG040898t1 313 HQCEICGKTFQTGQALGGHK 332
                       79********8877776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.3E-64063IPR007087Zinc finger, C2H2
PROSITE profilePS501579.9514067IPR007087Zinc finger, C2H2
SMARTSM003550.224062IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
PROSITE profilePS501579.86899126IPR007087Zinc finger, C2H2
PfamPF139120.04799124IPR007087Zinc finger, C2H2
SMARTSM003550.03599121IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.9E-799121No hitNo description
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
SuperFamilySSF576672.9E-7308335No hitNo description
PfamPF139126.2E-10312336IPR007087Zinc finger, C2H2
PROSITE profilePS501579.764313335IPR007087Zinc finger, C2H2
SMARTSM003550.11313335IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280315335IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MVPGDTSLDF LAQKLNAAEI IKLLEECVEA PDQSQDPTIR VCRYCHREFK SAKALGGHLR  60
IHSQHQSGSK AGIHHLENTE FAFSDLDSQQ SSEEDNAGFT CFVCDDGFSS LKLLCQHMRN  120
HREEDYNGIQ QPTPPQESTS LSEPQTTVEE GIDEVSPGND HNQGSSNDLL SYVSNWSATG  180
KRGRKQIDSD KIDGIIYNAV PLRVFYGSQV PWRERRLGDF ADSNQSLLKR KKQKTRLSKD  240
VSIESQSGAA NSYKTDSEAT VEVLGNSEQT TKNSISMATQ RGFESRISSK SISRSSHGKL  300
KKPKRAKAVN GVHQCEICGK TFQTGQALGG HKTYHRVKPV VDPSRGVLVQ RKAEEQLSGE  360
SGQVSDGFSR MPLPRPGELS GEAHPSAQSN QRVTKRLLDF DLNIPYRE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229235RKKQKTR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007015257.20.0PREDICTED: zinc finger protein ZAT9
TrEMBLA0A061GTP10.0A0A061GTP1_THECC; Uncharacterized protein
STRINGEOY328760.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1835248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.16e-08C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]