PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG040833t1
Common NameTCM_040833
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GRAS
Protein Properties Length: 471aa    MW: 52722.6 Da    PI: 5.68
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG040833t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS470.11.2e-143454671374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lLl+cA++v++g+le+a+ +L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ +   +see+ + klf+e++P++k+
  Thecc1EG040833t1  45 LIHLLLTCANHVATGSLENANIALEQISQLASPDGDTMQRMAAYFTEALADRILKAWPGLHKALNSTRIT--LVSEEVLVGKLFFEMFPFFKV 135
                       689*************************************************************999987..69******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                       +++++NqaI ea+ege++vHiiD+++ +++QW+aL+qaL++Rpegpp+lRiTg+++    +ke l +++ rL++ Ae+l++pf+fn+ ++++l
  Thecc1EG040833t1 136 AFVLTNQAIIEAMEGEKMVHIIDLNAAEPAQWIALIQALSARPEGPPHLRITGIHQ----QKEVLDQMAYRLTEEAEKLDIPFQFNP-IVSKL 223
                       ********************************************************....9**************************.7999* PP

              GRAS 187 edleleeLrvkpgEalaVnlvlqlhrll.........................................................desvsles 222
                       e+l++e+Lrvk+gEala+++vlqlh+ll                                                             s++s
  Thecc1EG040833t1 224 ENLDIEKLRVKTGEALAISSVLQLHSLLasddellrkksplasknlngihlqrslqmnqstlgellekdvvngyspspdsassspL---SSTS 313
                       ********************************************************************************985542...3333 PP

              GRAS 223 ..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313
                         + d++L+++++lsPk++vv+eq+++hn+++++er+le+l+ y+alfd+le++++r+s er kvE++l+g+ei+n++acegaer+erhe+le
  Thecc1EG040833t1 314 svKVDSFLNALWGLSPKLMVVTEQDSNHNGSTLMERLLESLYSYAALFDCLESTVSRASLERLKVEKMLFGEEIKNIIACEGAERKERHEKLE 406
                       445799*************************************************************************************** PP

              GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       kW +rl+ a F++vpls++   qa++ll+ ++ dgy+++ee+g++v++W+drpL+s+SaWr
  Thecc1EG040833t1 407 KWIQRLDLASFGNVPLSYYGLLQARRLLQGYNCDGYKMKEENGCVVICWQDRPLFSISAWR 467
                       ************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.81719447IPR005202Transcription factor GRAS
PfamPF035144.1E-14145467IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MFQDESSSVT SSPLQVFSMM SLSPNLGSPY PWLRELKSEE RGLYLIHLLL TCANHVATGS  60
LENANIALEQ ISQLASPDGD TMQRMAAYFT EALADRILKA WPGLHKALNS TRITLVSEEV  120
LVGKLFFEMF PFFKVAFVLT NQAIIEAMEG EKMVHIIDLN AAEPAQWIAL IQALSARPEG  180
PPHLRITGIH QQKEVLDQMA YRLTEEAEKL DIPFQFNPIV SKLENLDIEK LRVKTGEALA  240
ISSVLQLHSL LASDDELLRK KSPLASKNLN GIHLQRSLQM NQSTLGELLE KDVVNGYSPS  300
PDSASSSPLS STSSVKVDSF LNALWGLSPK LMVVTEQDSN HNGSTLMERL LESLYSYAAL  360
FDCLESTVSR ASLERLKVEK MLFGEEIKNI IACEGAERKE RHEKLEKWIQ RLDLASFGNV  420
PLSYYGLLQA RRLLQGYNCD GYKMKEENGC VVICWQDRPL FSISAWRCRK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-44454674375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007015187.20.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A061GTH90.0A0A061GTH9_THECC; Scarecrow-like 3
STRINGEOY328060.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]