PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG040737t1

Common Name

TCM_040737

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 403aa MW: 46073.4 Da PI: 5.5259

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG040737t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	154.3	5.6e-48	60	185	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 ppG+rF P deelv +yLkkkv++++l+ + i ev++y+++P++L +k+k+ +ekewyfF++rdkky++g+r+nra+ +gyWkatg d++v+ Thecc1EG040737t1 60 PPGYRFCPLDEELVLHYLKKKVKNERLPH-NRIVEVNLYHHNPETLAEKYKQyGEKEWYFFTPRDKKYRNGTRPNRAAGDGYWKATGADRQVI 151 9***********************999.77**********9544443889*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 kg++vg +k Lvfykg+ pkg kt+W+mheyr+ Thecc1EG040737t1 152 Y-KGHTVGFRKALVFYKGKPPKGDKTNWIMHEYRV 185 .999***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-55	58	211	IPR003441	NAC domain
PROSITE profile	PS51005	54.669	59	211	IPR003441	NAC domain
Pfam	PF02365	1.8E-25	60	185	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
METDEKPKPT LQSLVRKQLR PLNESSSDAS TVEVLKKEDS IKDSEENGDG GGDEYLDSFP 60 PGYRFCPLDE ELVLHYLKKK VKNERLPHNR IVEVNLYHHN PETLAEKYKQ YGEKEWYFFT 120 PRDKKYRNGT RPNRAAGDGY WKATGADRQV IYKGHTVGFR KALVFYKGKP PKGDKTNWIM 180 HEYRVNDPPP CKRVYNDMRL DDWVLCRIYK KVDKSISRTR SKEENQSPLI DNEDTNELMN 240 MDFDYNGGVD SMDYSSFLHQ SLSDGSYNNL QPVSDQFPTL TLSYGAHSKI VDSQSLRSLS 300 MKYPIDKGGQ DDIWSVVNLD FASQLELYGV SCVEPLINLD NNFSVDASNY SSANSKTDGT 360 GVGEASLKAS GEFERIWYYI LLFQVTQNSA EKSMIALDNW VL*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

METDEKPKPT LQSLVRKQLR PLNESSSDAS TVEVLKKEDS IKDSEENGDG GGDEYLDSFP  60
PGYRFCPLDE ELVLHYLKKK VKNERLPHNR IVEVNLYHHN PETLAEKYKQ YGEKEWYFFT  120
PRDKKYRNGT RPNRAAGDGY WKATGADRQV IYKGHTVGFR KALVFYKGKP PKGDKTNWIM  180
HEYRVNDPPP CKRVYNDMRL DDWVLCRIYK KVDKSISRTR SKEENQSPLI DNEDTNELMN  240
MDFDYNGGVD SMDYSSFLHQ SLSDGSYNNL QPVSDQFPTL TLSYGAHSKI VDSQSLRSLS  300
MKYPIDKGGQ DDIWSVVNLD FASQLELYGV SCVEPLINLD NNFSVDASNY SSANSKTDGT  360
GVGEASLKAS GEFERIWYYI LLFQVTQNSA EKSMIALDNW VL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-55	58	211	19	168	NAC domain-containing protein 19
3swm_B	1e-55	58	211	19	168	NAC domain-containing protein 19
3swm_C	1e-55	58	211	19	168	NAC domain-containing protein 19
3swm_D	1e-55	58	211	19	168	NAC domain-containing protein 19
3swp_A	1e-55	58	211	19	168	NAC domain-containing protein 19
3swp_B	1e-55	58	211	19	168	NAC domain-containing protein 19
3swp_C	1e-55	58	211	19	168	NAC domain-containing protein 19
3swp_D	1e-55	58	211	19	168	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017982374.1	0.0	PREDICTED: NAC domain-containing protein 67
Swissprot	A2YMR0	2e-62	NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBL	A0A061GZA8	0.0	A0A061GZA8_THECC; NAC domain transcriptional regulator superfamily protein, putative
STRING	EOY32709	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18874	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	6e-62	NAC domain containing protein 32

Link Out ? help Back to Top
Phytozome	Thecc1EG040737t1
Entrez Gene	18589866

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]