PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG040701t1 | ||||||||
Common Name | TCM_040701 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 709aa MW: 77302.3 Da PI: 6.704 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.5 | 5.5e-09 | 301 | 323 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C++f++ GtCk+Gd C +aHg Thecc1EG040701t1 301 GVPCPDFRK-GTCKRGDLCEYAHG 323 579******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00248 | 0.023 | 81 | 111 | IPR002110 | Ankyrin repeat |
Gene3D | G3DSA:1.25.40.20 | 2.1E-16 | 81 | 162 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.03E-14 | 81 | 195 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.31E-14 | 81 | 189 | No hit | No description |
PROSITE profile | PS50297 | 16.494 | 81 | 188 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.3E-9 | 81 | 150 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.012 | 116 | 148 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.713 | 116 | 151 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 3.1E-6 | 298 | 324 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.098 | 299 | 325 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.0E-7 | 302 | 323 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-5 | 303 | 324 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-4 | 330 | 361 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 18 | 333 | 356 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 709 aa Download sequence Send to blast |
MCGGLEQLNM KTTAPSSSLE TKTMDCLTGA VGSECSFSVL LEFAADNDVE GFQRSIRDGS 60 LVGEVGLWYG RRKCTKQIVV ERRTPLMIAA KYGSVDVVNL ILSLPEVEVN LSCGPDKSTA 120 LHCAASGGSI RAVEVVKLLL LAGADPCLTD ANGHRPFDVI VSPWNMPQMK VALEELLNNA 180 ASVCLENLHE LTVSLRSSSS SLSTSLGSGS SSLVSDAKIS LVTCKPADNN SSSAPDRKEY 240 PVDPSIPDIK SSIYGTDEFR MFSFKIRPCS RAYSHDWTEC PFVHPGENAR RRDPRKFHYS 300 GVPCPDFRKG TCKRGDLCEY AHGVFESWLH PAQYRTRLCK DGTTCNRRVC FFAHRPEELR 360 PLYVSSGMCI QSPQSAASAV TTMDRAAAMN LLPGSPSALC AMSMSPFSPA MSPSANGICQ 420 SPVGWPQQHV PTLHLAGSNI QASRLKSSFN ARDMPAMELN MSPNFDLHQQ QHLNSLSCLS 480 QPHLVTKSAN LDGLFLTEFS SPQYPDQVTA MPMLSSAHKS VLLNQLHQQQ RVLSPIKTNI 540 FSPKNDHPLS QSAFDASLSE RFSPWHVEPL SPLNSRFSAH TNLEKQFRGL SSQELEYKLS 600 DDLESKGTVG SPVNSWSKRE TPNDKVDWSV QEDELGQFCK SCSLGHHDME PAVSWVQSLV 660 KESPSALATA AASSQTLSVE GSNSHSDFGD HATFGAWHEL LKLDKIVA* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 69 | 76 | GRRKCTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007015052.2 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q9LXV4 | 0.0 | C3H56_ARATH; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | A0A061GT83 | 0.0 | A0A061GT83_THECC; C3HL domain class transcription factor, putative | ||||
STRING | EOY32671 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22361 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12850.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG040701t1 |
Entrez Gene | 18589839 |
Publications ? help Back to Top | |||
---|---|---|---|
|