PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG040701t1
Common NameTCM_040701
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 709aa    MW: 77302.3 Da    PI: 6.704
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG040701t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.55.5e-09301323326
                       S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        ++C++f++ GtCk+Gd C +aHg
  Thecc1EG040701t1 301 GVPCPDFRK-GTCKRGDLCEYAHG 323
                       579******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002480.02381111IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.202.1E-1681162IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.03E-1481195IPR020683Ankyrin repeat-containing domain
CDDcd002043.31E-1481189No hitNo description
PROSITE profilePS5029716.49481188IPR020683Ankyrin repeat-containing domain
PfamPF127962.3E-981150IPR020683Ankyrin repeat-containing domain
SMARTSM002480.012116148IPR002110Ankyrin repeat
PROSITE profilePS5008810.713116151IPR002110Ankyrin repeat
SMARTSM003563.1E-6298324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098299325IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-7302323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5303324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4330361IPR000571Zinc finger, CCCH-type
SMARTSM0035618333356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MCGGLEQLNM KTTAPSSSLE TKTMDCLTGA VGSECSFSVL LEFAADNDVE GFQRSIRDGS  60
LVGEVGLWYG RRKCTKQIVV ERRTPLMIAA KYGSVDVVNL ILSLPEVEVN LSCGPDKSTA  120
LHCAASGGSI RAVEVVKLLL LAGADPCLTD ANGHRPFDVI VSPWNMPQMK VALEELLNNA  180
ASVCLENLHE LTVSLRSSSS SLSTSLGSGS SSLVSDAKIS LVTCKPADNN SSSAPDRKEY  240
PVDPSIPDIK SSIYGTDEFR MFSFKIRPCS RAYSHDWTEC PFVHPGENAR RRDPRKFHYS  300
GVPCPDFRKG TCKRGDLCEY AHGVFESWLH PAQYRTRLCK DGTTCNRRVC FFAHRPEELR  360
PLYVSSGMCI QSPQSAASAV TTMDRAAAMN LLPGSPSALC AMSMSPFSPA MSPSANGICQ  420
SPVGWPQQHV PTLHLAGSNI QASRLKSSFN ARDMPAMELN MSPNFDLHQQ QHLNSLSCLS  480
QPHLVTKSAN LDGLFLTEFS SPQYPDQVTA MPMLSSAHKS VLLNQLHQQQ RVLSPIKTNI  540
FSPKNDHPLS QSAFDASLSE RFSPWHVEPL SPLNSRFSAH TNLEKQFRGL SSQELEYKLS  600
DDLESKGTVG SPVNSWSKRE TPNDKVDWSV QEDELGQFCK SCSLGHHDME PAVSWVQSLV  660
KESPSALATA AASSQTLSVE GSNSHSDFGD HATFGAWHEL LKLDKIVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16976GRRKCTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007015052.20.0PREDICTED: zinc finger CCCH domain-containing protein 56
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A061GT830.0A0A061GT83_THECC; C3HL domain class transcription factor, putative
STRINGEOY326710.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2236145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]