PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG040699t1
Common NameTCM_040699
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 251aa    MW: 28557.7 Da    PI: 7.6164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG040699t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.9e-1466118155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++ +hn+ Er RR+++Ns ++ Lr+llP a   + kKls  +++ +A +YI +Lq
  Thecc1EG040699t1  66 KKLNHNASERDRRKKVNSLYSSLRSLLPVA--DQMKKLSFPATVSQALKYIPELQ 118
                       6789*************************6..49999***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-1564136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.90365117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-466122No hitNo description
PfamPF000101.4E-1166118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1266132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-871123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MCALTPFPFP KWPLINPIGY EQDYIYGGSQ CVESFLHFPP PQEEILLDHQ SPSFTAQNSP  60
DPSTVKKLNH NASERDRRKK VNSLYSSLRS LLPVADQMKK LSFPATVSQA LKYIPELQEQ  120
VEGLVQKKEK LLLRISERGG LKREEQQRKS RLGRSLSSAI SINRLTDSEI AIQISMRKVD  180
QKNQLSKILQ YLEQDGLFHL LSATSFESFG GMDVFYNIHL QAETTYKLES EALSEKLLSI  240
LFDNREDLLP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007015050.21e-180PREDICTED: transcription factor ORG2
TrEMBLA0A061GZA00.0A0A061GZA0_THECC; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRINGEOY326690.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-50bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]