PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG040694t1
Common NameTCM_040694
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 342aa    MW: 38078.7 Da    PI: 5.1149
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG040694t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.9e-142572148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEd++l ++    G g+W+ +ar  g+ R++k+c++rw +yl
  Thecc1EG040694t1 25 KGLWSPEEDDKLMNYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 72
                      678*******************************************97 PP
2Myb_DNA-binding47.15.4e-1578144146
                       TSSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwqk 46 
                       rg+++++E+el+v+++  lG++                      +W+ Ia++++ gRt++++k++w++
  Thecc1EG040694t1  78 RGAFSPQEEELIVHLHSILGNRlmvmdsryiyvikimevkeqdeRWSQIAARLP-GRTDNEIKNFWNS 144
                       89****************************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.0922076IPR017930Myb domain
SMARTSM007173.2E-102474IPR001005SANT/Myb domain
SuperFamilySSF466892.98E-222576IPR009057Homeodomain-like
PfamPF002492.8E-132572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-222679IPR009057Homeodomain-like
CDDcd001672.23E-82872No hitNo description
PROSITE profilePS5129411.37877150IPR017930Myb domain
SMARTSM007173.3E-1277148IPR001005SANT/Myb domain
PfamPF002491.7E-1278144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2280151IPR009057Homeodomain-like
CDDcd001671.09E-780143No hitNo description
SuperFamilySSF466892.98E-22118147IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MMRKPDTSAK GSNGGNNNGT NKLRKGLWSP EEDDKLMNYM LTNGQGCWSD VARNAGLQRC  60
GKSCRLRWIN YLRPDLKRGA FSPQEEELIV HLHSILGNRL MVMDSRYIYV IKIMEVKEQD  120
ERWSQIAARL PGRTDNEIKN FWNSTIKKRL KNLSSTPSPN ASDSSSEPNK NAMAGFKSMQ  180
EQGILPVYMD LSSTSPNSSL QSMVLNHTGN SLPMLEAGLN VFGATGCFNP ASCVTQAGVN  240
VDSFYGENEI FGSVDNGVER ELYVPPLESI GENLKTENTY DRNINNPFNI INSTSNNNYK  300
AENIAGAVGN FWLGEEIKVG EWDLEDLMKD VSSFPFLDFQ S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-22191501108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982095.10.0PREDICTED: transcription factor MYB46
TrEMBLA0A061GTG80.0A0A061GTG8_THECC; Myb domain protein 46, putative
STRINGEOY326630.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61152347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.15e-68myb domain protein 83
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]