PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG040610t1 | ||||||||
Common Name | TCM_040610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C2H2 | ||||||||
Protein Properties | Length: 345aa MW: 38751.1 Da PI: 6.6837 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8e-05 | 183 | 202 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Thecc1EG040610t1 183 FSCPLCFKTFNRYNNMQMHM 202 89*****************9 PP | |||||||
2 | zf-C2H2 | 15.6 | 4.6e-05 | 267 | 289 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F + + ++H +++ Thecc1EG040610t1 267 FMCRKCGKTFAVRGDWRTHEKNC 289 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.61 | 183 | 205 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.9E-5 | 183 | 202 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.66 | 183 | 210 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 185 | 205 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.29E-6 | 248 | 287 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-5 | 263 | 287 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 35 | 267 | 287 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.725 | 267 | 287 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MSDSDPYSDY FNGWFNPNPF NHFFPSTSTS NPSSYAPNYG YNIYSNIIHG NFFTQYNSQG 60 SPPSPPLKEA LPLLSLSPTR HEDQELSCSA MEVEKNKDKE ESCCFSSTAD DETVTVALHL 120 GLPSATSADL ISRVSVAADE VSAALAADKE DDTVASEYQL NTLNKGQYWI PTPAQILIGP 180 TQFSCPLCFK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTAMLRLPCY CCAPGCRNNI 240 DHPRSKPLKD FRTLQTHYKR KHGIKPFMCR KCGKTFAVRG DWRTHEKNCG KLWYCTCGSD 300 FKHKRSLKDH IRAFGNGHAP YGIDSFDEED EPASEIEQDN ESSQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007014983.2 | 0.0 | PREDICTED: zinc finger protein WIP2 | ||||
Swissprot | Q9SVY1 | 1e-142 | ZWIP2_ARATH; Zinc finger protein WIP2 | ||||
TrEMBL | A0A061GTW4 | 0.0 | A0A061GTW4_THECC; C2H2-type zinc finger family protein | ||||
STRING | EOY32602 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-135 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG040610t1 |
Entrez Gene | 18589792 |
Publications ? help Back to Top | |||
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