PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG040565t3 | ||||||||
Common Name | TCM_040565 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | FAR1 | ||||||||
Protein Properties | Length: 753aa MW: 87094.7 Da PI: 7.314 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.2 | 4.1e-26 | 29 | 114 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y+eYAk+vGF + k +s++s+ ++e+++++f+C ++g++++++++ ++r++ ++gCka+++vk+++dgkw+v+++ ++HnHel p Thecc1EG040565t3 29 YYKEYAKSVGFGTAKLSSRRSRVSKEFIDAKFTCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQDGKWYVYSFIKDHNHELLP 114 8***************************************999877....9************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.0E-24 | 29 | 114 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.3E-27 | 226 | 319 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.744 | 506 | 542 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.0E-8 | 512 | 540 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.2E-7 | 517 | 544 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 753 aa Download sequence Send to blast |
MDSSISTSDT ILEPHSDLEF ESHEAAYTYY KEYAKSVGFG TAKLSSRRSR VSKEFIDAKF 60 TCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFIKDHNH ELLPAQAHFF 120 RSHRNVDPLK NDVGRRRKNL AAVSKLFGAY QNIEFLEGYM RNQHDKGRSL VLEEGDAQVL 180 LELFMNMQEE NPKFFYAVDL NEEHRLRNVF WVDAKGMEDF SNFGDVVSFD ISYFTNKYKI 240 PLVLFIGVNH HIQPTLLGCA LIADETVYTF LWLMQTWFIA MGERAPRVML TDQNNAIKAA 300 VAAVFPNTRH CFCLWHVLEK LPRHLEYLSL WHESLMLKFD KCIYRSWNEE QFEKRWWKMV 360 DKFHLREMQW VQSLYEDRKQ WVPTFMRDIS FAGLSTALRS DSLSSSFDKY VHGETSLRAF 420 IEQYRVILED RYEEEAKADF NAWHETPELK SPSPFEKQLS IVYTHEIFKK FQAEVLGAAA 480 CHLKKENEDQ ASMTYSVKDF EDNQNYMVEW NESKSDIYCS CHSFEYKGYL CRHAIVVLQM 540 SGIFSIPSKY ILQRWTNAAL SRRPMSQKLD EVQSKVRRYS DLCRRAIILS EEGSLSQESY 600 NLALAAIKGA RKQCASVNNS VENDARPNTS VIYAVSGVEG QNQCVNAPEE KDPDPRMANT 660 IKTSRSVEAV LERQINENNP TRNGKVSLVG AANVGSQDGF HQMELSDMRP TPMHNVMPTQ 720 LHNMVPTMLT NVASTHFHNV AATHLHDNRL QR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017983768.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 4 | ||||
Swissprot | Q6NQJ7 | 0.0 | FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4 | ||||
TrEMBL | A0A061GZ60 | 0.0 | A0A061GZ60_THECC; Far1-related sequence 4 isoform 3 | ||||
STRING | EOY32573 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.1 | 0.0 | FAR1-related sequence 4 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG040565t3 |
Entrez Gene | 18589771 |
Publications ? help Back to Top | |||
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