PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG040565t2

Common Name

TCM_040565

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 754aa MW: 87222.8 Da PI: 7.314

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG040565t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.2	4.2e-26	29	114	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y+eYAk+vGF + k +s++s+ ++e+++++f+C ++g++++++++ ++r++ ++gCka+++vk+++dgkw+v+++ ++HnHel p Thecc1EG040565t2 29 YYKEYAKSVGFGTAKLSSRRSRVSKEFIDAKFTCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQDGKWYVYSFIKDHNHELLP 114 8*************************************999877....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.0E-24	29	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-27	226	319	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.744	506	542	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.0E-8	512	540	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.2E-7	517	544	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MDSSISTSDT ILEPHSDLEF ESHEAAYTYY KEYAKSVGFG TAKLSSRRSR VSKEFIDAKF 60 TCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFIKDHNH ELLPAQAHFF 120 RSHRNVDPLK NDVGRRRKNL AAVSKLFGAY QNIEFLEGYM RNQHDKGRSL VLEEGDAQVL 180 LELFMNMQEE NPKFFYAVDL NEEHRLRNVF WVDAKGMEDF SNFGDVVSFD ISYFTNKYKI 240 PLVLFIGVNH HIQPTLLGCA LIADETVYTF LWLMQTWFIA MGERAPRVML TDQNNAIKAA 300 VAAVFPNTRH CFCLWHVLEK LPRHLEYLSL WHESLMLKFD KCIYRSWNEE QFEKRWWKMV 360 DKFHLREMQW VQSLYEDRKQ WVPTFMRDIS FAGLSTALRS DSLSSSFDKY VHGETSLRAF 420 IEQYRVILED RYEEEAKADF NAWHETPELK SPSPFEKQLS IVYTHEIFKK FQAEVLGAAA 480 CHLKKENEDQ ASMTYSVKDF EDNQNYMVEW NESKSDIYCS CHSFEYKGYL CRHAIVVLQM 540 SGIFSIPSKY ILQRWTNAAL SRRPMSQKLD EVQSKVRRYS DLCRRAIILS EEGSLSQESY 600 NLALAAIKGA RKQCASVNNS VENDARPNTS VIYAVSGVEG QNQCVNAPEE KDPDPRMANT 660 IKTSRSVEAV LERQINENNP TRNGKQVSLV GAANVGSQDG FHQMELSDMR PTPMHNVMPT 720 QLHNMVPTML TNVASTHFHN VAATHLHDNR LQR*

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MDSSISTSDT ILEPHSDLEF ESHEAAYTYY KEYAKSVGFG TAKLSSRRSR VSKEFIDAKF  60
TCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFIKDHNH ELLPAQAHFF  120
RSHRNVDPLK NDVGRRRKNL AAVSKLFGAY QNIEFLEGYM RNQHDKGRSL VLEEGDAQVL  180
LELFMNMQEE NPKFFYAVDL NEEHRLRNVF WVDAKGMEDF SNFGDVVSFD ISYFTNKYKI  240
PLVLFIGVNH HIQPTLLGCA LIADETVYTF LWLMQTWFIA MGERAPRVML TDQNNAIKAA  300
VAAVFPNTRH CFCLWHVLEK LPRHLEYLSL WHESLMLKFD KCIYRSWNEE QFEKRWWKMV  360
DKFHLREMQW VQSLYEDRKQ WVPTFMRDIS FAGLSTALRS DSLSSSFDKY VHGETSLRAF  420
IEQYRVILED RYEEEAKADF NAWHETPELK SPSPFEKQLS IVYTHEIFKK FQAEVLGAAA  480
CHLKKENEDQ ASMTYSVKDF EDNQNYMVEW NESKSDIYCS CHSFEYKGYL CRHAIVVLQM  540
SGIFSIPSKY ILQRWTNAAL SRRPMSQKLD EVQSKVRRYS DLCRRAIILS EEGSLSQESY  600
NLALAAIKGA RKQCASVNNS VENDARPNTS VIYAVSGVEG QNQCVNAPEE KDPDPRMANT  660
IKTSRSVEAV LERQINENNP TRNGKQVSLV GAANVGSQDG FHQMELSDMR PTPMHNVMPT  720
QLHNMVPTML TNVASTHFHN VAATHLHDNR LQR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017983768.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A061GTS8	0.0	A0A061GTS8_THECC; Far1-related sequence 4 isoform 1
STRING	EOY32573	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	Thecc1EG040565t2
Entrez Gene	18589771

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]