PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG040564t3
Common NameTCM_040564
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 424aa    MW: 47153.3 Da    PI: 7.0345
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG040564t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12368413655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++Er RR +i +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  Thecc1EG040564t3 368 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 413
                       689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.288362412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-15365416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.80E-12366415No hitNo description
Gene3DG3DSA:4.10.280.106.1E-14367416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-13368418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9368413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010119Biological Processregulation of stomatal movement
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MESDLQHHHH HLIDYHQPQH HQKQMNSGLM RYQSAPSSYF SSILDRDFCQ EFLNRPSSPE  60
TERIIERFLS SSGDGGGGNT VNISDQNLCA ITQNSPVRET VIKIEEPTQI MTPMNNQTGV  120
MQQQQQQQQQ PQQGNYSSAS QNFYQSQPQQ HLPNQQSGST MDYRIPNSMG MARPTQMKMG  180
GGNNSNLVRH SSSPAGLFSN LNIDNIAGYG VVRGMGDYGG VNNSNREASF PSASRPPPSG  240
LMSPIAEMGN KNVVPNSSEN AGFGENRHNN YSSGFPVTSW EDSMMISDNM PGVKRLREDD  300
RSLSGLDLDG AETQNTDAGN RPPPILAHHL SLPKSSAEMS AIDKFLQYQD SVPCKIRAKR  360
GCATHPRSIA ERVRRTKISE RMRKLQDLVP NMDKQTNTAD MLDLAVDYIK DLQNQTLSDN  420
RAKC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007014949.20.0PREDICTED: transcription factor bHLH122 isoform X1
TrEMBLA0A061GRU20.0A0A061GRU2_THECC; DNA binding protein, putative isoform 3 (Fragment)
STRINGEOY325680.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-62bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]