PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG040564t2 | ||||||||
Common Name | TCM_040564 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 433aa MW: 48158.4 Da PI: 7.6607 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.3e-12 | 366 | 411 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + a++L +Av+YIk+Lq Thecc1EG040564t2 366 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 411 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.288 | 360 | 410 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-16 | 363 | 424 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.05E-12 | 364 | 415 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-15 | 365 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.6E-9 | 366 | 411 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-14 | 366 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 433 aa Download sequence Send to blast |
MESDLQHHHH HLIDYHQPQH HQKQMNSGLM RYQSAPSSYF SSILDRDFCQ EFLNRPSSPE 60 TERIIERFLS SSGDGGGGNT VNISDQNLCA ITQNSPVRET VIKIEEPTQI MTPMNNQTGV 120 MQQQQQQQQQ PQQGNYSSAS QNFYQSQPQQ HLPNQQSGST MDYRIPNSMG MARPTQMKMG 180 GGNNSNLVRH SSSPAGLFSN LNIDNSYGVV RGMGDYGGVN NSNREASFPS ASRPPPSGLM 240 SPIAEMGNKN VVPNSSENAG FGENRHNNYS SGFPVTSWED SMMISDNMPG VKRLREDDRS 300 LSGLDLDGAE TQNTDAGNRP PPILAHHLSL PKSSAEMSAI DKFLQYQDSV PCKIRAKRGC 360 ATHPRSIAER VRRTKISERM RKLQDLVPNM DKQTNTADML DLAVDYIKDL QNQVKTLSDN 420 RAKCSCSNKQ QR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007014950.2 | 0.0 | PREDICTED: transcription factor bHLH122 isoform X2 | ||||
TrEMBL | A0A061GZ59 | 0.0 | A0A061GZ59_THECC; DNA binding protein, putative isoform 2 | ||||
STRING | EOY32568 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 5e-71 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG040564t2 |
Entrez Gene | 18589770 |
Publications ? help Back to Top | |||
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