PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG040388t2 | ||||||||
Common Name | TCM_040388 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C3H | ||||||||
Protein Properties | Length: 227aa MW: 23560.7 Da PI: 8.9225 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.2 | 3.2e-09 | 31 | 56 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+Gd+C+FaHg+ Thecc1EG040388t2 31 KTRLCNKFNTPEGCKFGDKCHFAHGE 56 8***********************96 PP | |||||||
2 | zf-CCCH | 37.7 | 3.5e-12 | 193 | 217 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f++ G C +GdrC+FaHg Thecc1EG040388t2 193 FKTKLCENFSK-GSCTFGDRCHFAHG 217 69*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-14 | 27 | 61 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-8 | 28 | 60 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.629 | 29 | 57 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0056 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-6 | 31 | 56 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 3.36E-15 | 93 | 170 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 3.5E-12 | 99 | 169 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 2.7E-16 | 100 | 169 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.508 | 100 | 164 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 2.0E-11 | 102 | 166 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 7.11E-15 | 104 | 164 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-16 | 191 | 224 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.075 | 192 | 219 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-7 | 192 | 218 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-9 | 192 | 222 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 193 | 217 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MLGSNPALPA ASRSSAVLPS FPDGSSPPAV KTRLCNKFNT PEGCKFGDKC HFAHGEWELG 60 KPTGPAYEDP RAMGPMPGRM AGRMEPPSQG LGAAASFGAS ATAKISIDAS LAGAIIGKNG 120 VNSKHICRVT GAKLSIRENE SDPSSRNIEL EGTFDQIKQA SAMVRELILN VGSASGTSMK 180 NPAMSGSGAA NNFKTKLCEN FSKGSCTFGD RCHFAHGTEE LRKPGM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017983881.1 | 1e-164 | PREDICTED: zinc finger CCCH domain-containing protein 44 | ||||
Swissprot | Q7F8R0 | 5e-81 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A061GRG2 | 1e-164 | A0A061GRG2_THECC; KH domain-containing protein / zinc finger family protein isoform 2 | ||||
STRING | EOY32449 | 1e-164 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-48 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG040388t2 |
Entrez Gene | 18589690 |
Publications ? help Back to Top | |||
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