PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG039821t6

Common Name

TCM_039821

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C3H

Protein Properties

Length: 344aa MW: 37471.4 Da PI: 8.679

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG039821t6	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.7	8.2e-13	3	27	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk e+Cr+f+r G C+yG+rCkF H+ Thecc1EG039821t6 3 YKKEPCRNFQR-GSCQYGERCKFLHV 27 9********.***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	2.88E-6	2	29	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.6E-7	2	28	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.6E-9	3	26	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	17.037	3	29	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.2E-10	3	27	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MHYKKEPCRN FQRGSCQYGE RCKFLHVIQQ QPKSNAFGFG TQASSHQQQK PNPFGFGVQN 60 NVQSKGANDF GNKQNQFKNT WTRSSASSAP SLRQPDNQPQ ATNHQCTDPE LCKRTIIEDF 120 EHERPLWKLT CYSHWKNSPC DIVGDVSFEE LRATAYDDAK HGLSLQSIVE RERNLLNSKL 180 VEFENLLRNP YTGPVGSTLA QQIPFPTATA TAFSPQNTGR SQNGFPPSVS SFSQLGASLN 240 SGSAVRPSIQ SNNAFGQPIS FSSSAQASSV FATNNIPLAN ASAFTTSMSS FSNSSVTSTA 300 LNQFSAPVVS TQNLSLSSVQ PPALFNVSNL ISKADGQSAT DIQL

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MHYKKEPCRN FQRGSCQYGE RCKFLHVIQQ QPKSNAFGFG TQASSHQQQK PNPFGFGVQN  60
NVQSKGANDF GNKQNQFKNT WTRSSASSAP SLRQPDNQPQ ATNHQCTDPE LCKRTIIEDF  120
EHERPLWKLT CYSHWKNSPC DIVGDVSFEE LRATAYDDAK HGLSLQSIVE RERNLLNSKL  180
VEFENLLRNP YTGPVGSTLA QQIPFPTATA TAFSPQNTGR SQNGFPPSVS SFSQLGASLN  240
SGSAVRPSIQ SNNAFGQPIS FSSSAQASSV FATNNIPLAN ASAFTTSMSS FSNSSVTSTA  300
LNQFSAPVVS TQNLSLSSVQ PPALFNVSNL ISKADGQSAT DIQL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007014598.2	0.0	PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X4
Swissprot	Q9FWS3	5e-74	C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBL	A0A061GSU7	0.0	A0A061GSU7_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 6 (Fragment)
STRING	EOY32212	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.1	1e-75	C3H family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG039821t6
Entrez Gene	18589520

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]