PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG039821t5 | ||||||||
Common Name | TCM_039821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C3H | ||||||||
Protein Properties | Length: 285aa MW: 31367.7 Da PI: 8.8782 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40 | 6.4e-13 | 3 | 27 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk e+Cr+f+r G C+yG+rCkF H+ Thecc1EG039821t5 3 YKKEPCRNFQR-GSCQYGERCKFLHV 27 9**********.*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.6E-7 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.037 | 3 | 29 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-9 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-10 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MHYKKEPCRN FQRGSCQYGE RCKFLHVIQQ QPKSNAFGFG TQASSHQQQK PNPFGFGVQN 60 NVQSKGANDF GNKQNQFKNT WTRSSASSAP SLRQPDNQPQ ATNHQCTDPE LCKRTIIEDF 120 EHERPLWKLT CYSHWKNSPC DIVGDVSFEE LRATAYDDAK HGLSLQSIVE RERNLLNSKL 180 VEFENLLRNP YTGPVGSTLA QQIPFPTATA TAFSPQNTGR SQNGFPPSVS SFSQLGASLN 240 SGSAVRPSIQ SNNAFGQPIS FSSSAQASSV FATNNIPLAN AFLT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007014594.2 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 | ||||
Refseq | XP_017983356.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X3 | ||||
Swissprot | Q9FWS3 | 9e-74 | C3H16_ARATH; Zinc finger CCCH domain-containing protein 16 | ||||
TrEMBL | A0A061GRV6 | 0.0 | A0A061GRV6_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 5 | ||||
STRING | EOY32212 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 8e-76 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG039821t5 |
Entrez Gene | 18589520 |
Publications ? help Back to Top | |||
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