PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG039821t4

Common Name

TCM_039821

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C3H

Protein Properties

Length: 368aa MW: 39820 Da PI: 8.376

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG039821t4	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.9	5.4e-06	1	12	15	26
-TTTTT-SS-SS CS zf-CCCH 15 CkyGdrCkFaHg 26 C+yG+rCkF H+ Thecc1EG039821t4 1 CQYGERCKFLHV 12 ***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.202	1	14	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
CQYGERCKFL HVIQQQPKSN AFGFGTQASS HQQQKPNPFG FGVQNNVQSK GANDFGNKQN 60 QFKNTWTRSS ASSAPSLRQP DNQPQATNHQ CTDPELCKRT IIEDFEHERP LWKLTCYSHW 120 KNSPCDIVGD VSFEELRATA YDDAKHGLSL QSIVERERNL LNSKLVEFEN LLRNPYTGPV 180 GSTLAQQIPF PTATATAFSP QNTGRSQNGF PPSVSSFSQL GASLNSGSAV RPSIQSNNAF 240 GQPISFSSSA QASSVFATNN IPLANAFSFG NQQPNQSVAA AFTTSMSSFS NSSVTSTALN 300 QFSAPVVSTQ NLSLSSVQPP ALFNVSNLIS KADGQSATDI QLGNLQRKIV SGDSSVWLKE 360 KWIPGEL*

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

CQYGERCKFL HVIQQQPKSN AFGFGTQASS HQQQKPNPFG FGVQNNVQSK GANDFGNKQN  60
QFKNTWTRSS ASSAPSLRQP DNQPQATNHQ CTDPELCKRT IIEDFEHERP LWKLTCYSHW  120
KNSPCDIVGD VSFEELRATA YDDAKHGLSL QSIVERERNL LNSKLVEFEN LLRNPYTGPV  180
GSTLAQQIPF PTATATAFSP QNTGRSQNGF PPSVSSFSQL GASLNSGSAV RPSIQSNNAF  240
GQPISFSSSA QASSVFATNN IPLANAFSFG NQQPNQSVAA AFTTSMSSFS NSSVTSTALN  300
QFSAPVVSTQ NLSLSSVQPP ALFNVSNLIS KADGQSATDI QLGNLQRKIV SGDSSVWLKE  360
KWIPGEL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017983355.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X2
TrEMBL	A0A061GQX2	0.0	A0A061GQX2_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 4 (Fragment)
STRING	EOY32212	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.1	3e-67	C3H family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG039821t4
Entrez Gene	18589520

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]