PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG039821t3 | ||||||||
Common Name | TCM_039821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C3H | ||||||||
Protein Properties | Length: 369aa MW: 39907.1 Da PI: 8.376 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.9 | 5.4e-06 | 1 | 12 | 15 | 26 |
-TTTTT-SS-SS CS zf-CCCH 15 CkyGdrCkFaHg 26 C+yG+rCkF H+ Thecc1EG039821t3 1 CQYGERCKFLHV 12 ***********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.202 | 1 | 14 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
CQYGERCKFL HVIQQQPKSN AFGFGTQASS HQQQKPNPFG FGVQNNVQSK GANDFGNKQN 60 QFKNTWTRSS ASSAPSLRQP DNQPQATNHQ CTDPELCKRT IIEDFEHERP LWKLTCYSHW 120 KNSPCDIVGD VSFEELRATA YDDAKHGLSL QSIVERERNL LNSKLVEFEN LLRNPYTGPV 180 GSTLAQQIPF PTATATAFSP QNTGRSQNGF PPSVSSFSQL GASLNSGSAV RPSIQSNNAF 240 GQPISFSSSA QASSVFATNN IPLANAFSFG NQQPNQSVAA AFTTSMSSFS NSSVTSTALN 300 QFSAPVVSTQ NLSLSSVQPP ALFNVSNLIS KADGQSATDI QLGSNLQRKI VSGDSSVWLK 360 EKWIPGEL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017983356.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X3 | ||||
TrEMBL | A0A061GYK8 | 0.0 | A0A061GYK8_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 3 (Fragment) | ||||
STRING | EOY32212 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 3e-67 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG039821t3 |
Entrez Gene | 18589520 |
Publications ? help Back to Top | |||
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