PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG039821t1 | ||||||||
Common Name | TCM_039821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C3H | ||||||||
Protein Properties | Length: 394aa MW: 42839.3 Da PI: 8.2837 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.4 | 9.7e-13 | 3 | 27 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk e+Cr+f+r G C+yG+rCkF H+ Thecc1EG039821t1 3 YKKEPCRNFQR-GSCQYGERCKFLHV 27 9**********.*************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.4E-6 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.6E-7 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.037 | 3 | 29 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-9 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-10 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MHYKKEPCRN FQRGSCQYGE RCKFLHVIQQ QPKSNAFGFG TQASSHQQQK PNPFGFGVQN 60 NVQSKGANDF GNKQNQFKNT WTRSSASSAP SLRQPDNQPQ ATNHQCTDPE LCKRTIIEDF 120 EHERPLWKLT CYSHWKNSPC DIVGDVSFEE LRATAYDDAK HGLSLQSIVE RERNLLNSKL 180 VEFENLLRNP YTGPVGSTLA QQIPFPTATA TAFSPQNTGR SQNGFPPSVS SFSQLGASLN 240 SGSAVRPSIQ SNNAFGQPIS FSSSAQASSV FATNNIPLAN AFSFGNQQPN QSVAAAFTTS 300 MSSFSNSSVT STALNQFSAP VVSTQNLSLS SVQPPALFNV SNLISKADGQ SATDIQLGSN 360 LQRKIVSGDS SVWLKEKWIP GEIPEEAPPD AYV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007014594.2 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 | ||||
TrEMBL | A0A061GS52 | 0.0 | A0A061GS52_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative isoform 1 | ||||
STRING | EOY32212 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10724 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 8e-75 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG039821t1 |
Entrez Gene | 18589520 |
Publications ? help Back to Top | |||
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