PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG039819t1
Common NameTCM_039819
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family G2-like
Protein Properties Length: 410aa    MW: 45553.8 Da    PI: 7.2327
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG039819t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.38.5e-29288342155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       k+r+rW p+LHe F++av++LGG+e AtPk+il+lm+v+gL + hvkSHLQkYRl
  Thecc1EG039819t1 288 KQRIRWMPKLHELFLNAVDKLGGPESATPKNILKLMNVQGLHICHVKSHLQKYRL 342
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-26286343IPR009057Homeodomain-like
SuperFamilySSF466891.65E-14286343IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-23288343IPR006447Myb domain, plants
PfamPF143791.2E-6380402IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MTIFSLSGLV EVLFRASFLL LLLVLCHHLI ESEKHNYHEQ SVKGAMQTSR SGPSSVYKLL  60
SGEPIGLSSA NGNSSFTILQ PCYEQSEAPA SAPQASVSQP RDLIPNPVPH NSYIICHKST  120
RLCTGFHSST SESSNTEKHV GNSRCSSPLP MFDHLIPATN TPDSSLLFGE GKTTTCDKED  180
FEKFMVFPHV PAENSTVIPE HSAYPKGTLT LKEQLQLQYL TRELEIEMNG NGSENENPGL  240
AETHKVPRVA TVPVIQLEHN RNCLSSVVNL DGCIHSTHQH PEAVAANKQR IRWMPKLHEL  300
FLNAVDKLGG PESATPKNIL KLMNVQGLHI CHVKSHLQKY RLAKNVSELK HDKRSSRFEE  360
KETLTETHGD GNIAKERDTQ VLETLRMQVE VQKLLHEQLK VRSCAALCW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-18288344258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-18288344258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-18288344258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-18288344258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-18288344258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-18288344258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-18288344258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-18288344258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982335.10.0PREDICTED: myb family transcription factor PHL6-like
TrEMBLA0A061GYK50.0A0A061GYK5_THECC; Myb-like HTH transcriptional regulator family protein
STRINGEOY322090.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2122345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.22e-50G2-like family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]