PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG039471t2 | ||||||||
Common Name | TCM_039471 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 27956.9 Da PI: 4.914 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.5 | 2.3e-13 | 58 | 100 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ + K++Ka+i + A++YI++L Thecc1EG039471t2 58 VSERNRRKKLNERLFSLRAVVPNiS------KMDKASIIKDAIDYIQEL 100 57*********************66......****************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.59 | 51 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-17 | 52 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.09E-12 | 54 | 105 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.9E-16 | 57 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.9E-15 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.3E-11 | 58 | 100 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 8.558 | 172 | 244 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MLAMENIENI GDEYKNYWET KYFLENEEYS WAIDEFSGYY DSSSPDGAAS SAASKNIVSE 60 RNRRKKLNER LFSLRAVVPN ISKMDKASII KDAIDYIQEL HEQERRIQAE ILELESGKLK 120 KNPGYEFDQE LPVLLRSKKT KLENIFDSGG SRTSPIEVLE LKVTHMGEKT VVVSITCSKR 180 TDTMVKLCEV FESLKLKIIT ANITAVSGRL LKTVFIEADE KEKDELKAQI ETAIAALNDP 240 QSPMSM* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-13 | 56 | 116 | 9 | 69 | Transcription factor MYC2 |
5gnj_B | 1e-13 | 56 | 116 | 9 | 69 | Transcription factor MYC2 |
5gnj_E | 1e-13 | 56 | 116 | 9 | 69 | Transcription factor MYC2 |
5gnj_F | 1e-13 | 56 | 116 | 9 | 69 | Transcription factor MYC2 |
5gnj_G | 1e-13 | 56 | 116 | 9 | 69 | Transcription factor MYC2 |
5gnj_I | 1e-13 | 56 | 116 | 9 | 69 | Transcription factor MYC2 |
5gnj_M | 1e-13 | 56 | 116 | 9 | 69 | Transcription factor MYC2 |
5gnj_N | 1e-13 | 56 | 116 | 9 | 69 | Transcription factor MYC2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007014436.2 | 1e-180 | PREDICTED: transcription factor bHLH35 isoform X2 | ||||
Swissprot | Q2HIV9 | 1e-94 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A061GQC0 | 1e-180 | A0A061GQC0_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 2 | ||||
STRING | Gorai.013G242800.1 | 1e-163 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G57150.1 | 3e-80 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG039471t2 |
Entrez Gene | 18589410 |
Publications ? help Back to Top | |||
---|---|---|---|
|