PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG039471t1
Common NameTCM_039471
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 318aa    MW: 35881.5 Da    PI: 5.3414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG039471t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.5e-1359101754
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Thecc1EG039471t1  59 VSERNRRKKLNERLFSLRAVVPNiS------KMDKASIIKDAIDYIQEL 101
                       57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.5952101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-1753116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.81E-1355106No hitNo description
Gene3DG3DSA:4.10.280.104.4E-1658116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-1558107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1059101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MLAMENIENI GDEYKNYWET KYFLENEEYS SWAIDEFSGY YDSSSPDGAA SSAASKNIVS  60
ERNRRKKLNE RLFSLRAVVP NISKMDKASI IKDAIDYIQE LHEQERRIQA EILELESGKL  120
KKNPGYEFDQ ELPVLLRSKK TKLENIFDSG GSRTSPIEVL ELKVTHMGEK TVVVSITCSK  180
RTDTMVKLCE VFESLKLKII TANITAVSGR LLKTVFIEVS PFKFTSLMPF ALCSIPACLV  240
SNYFVIVPLF TKPYDIVLIL LSIPTIQTFK LTANIFCQNL PKTIMEAKAD EKEKDELKAQ  300
IETAIAALND PQSPMSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1357117969Transcription factor MYC2
5gnj_B3e-1357117969Transcription factor MYC2
5gnj_E3e-1357117969Transcription factor MYC2
5gnj_F3e-1357117969Transcription factor MYC2
5gnj_G3e-1357117969Transcription factor MYC2
5gnj_I3e-1357117969Transcription factor MYC2
5gnj_M3e-1357117969Transcription factor MYC2
5gnj_N3e-1357117969Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017983886.11e-157PREDICTED: transcription factor bHLH35 isoform X1
SwissprotQ2HIV94e-82BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A061GY580.0A0A061GY58_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 1
STRINGEOY320540.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.27e-76bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]