PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG038829t1
Common NameTCM_038829
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family CO-like
Protein Properties Length: 368aa    MW: 40292.4 Da    PI: 6.7429
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG038829t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.43e-082264438
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Ht 38
                      ++C+++++  + +fC+ ++ ++C +C + +H+g        H+
  Thecc1EG038829t1 22 KTCDTCKSAAAAIFCRADSAFMCLNCDSRIHSGnnklvssrHE 64
                      79*****************************877667766666 PP
2zf-B_box26.81.1e-0866111342
          zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                        ++C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  Thecc1EG038829t1  66 VWMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPV 111
                       689*****************************66899999999986 PP
3CCT69.87e-24293337145
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                       Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k+ae
  Thecc1EG038829t1 293 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRAE 337
                       9*****************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.8691968IPR000315B-box-type zinc finger
SMARTSM003361.5E-51960IPR000315B-box-type zinc finger
PfamPF006439.6E-62265IPR000315B-box-type zinc finger
CDDcd000212.56E-72468No hitNo description
PROSITE profilePS5011910.8564111IPR000315B-box-type zinc finger
SMARTSM003369.9E-1664111IPR000315B-box-type zinc finger
PfamPF006439.6E-766111IPR000315B-box-type zinc finger
CDDcd000213.16E-967111No hitNo description
PfamPF062037.2E-18293335IPR010402CCT domain
PROSITE profilePS5101716.817293335IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MRMGMEIASV KGIPGGWGMA AKTCDTCKSA AAAIFCRADS AFMCLNCDSR IHSGNNKLVS  60
SRHERVWMCE VCEQAPAAVT CKADAAALCV TCDADIHSAN PLARRHERVP VEPFFDSADT  120
VVKSSPFSFL VPTDRSGACQ QEDVEPGSWL LPNPNLISKL SGETNQVKTG DLFFSEIDPF  180
IDFEYQNSFQ PHNNAAMDSV VPVQAKPATI PVINNENCFD IDFCRSKLTA FSYQTPSLSQ  240
SVSSSSLEVG VVPDGNTLSE ISYPFGRTMT DPSVPISATT TNNQAPQACG IDREARVLRY  300
REKRKNRKFE KTIRYASRKA YAESRPRIKG RFAKRAEIDN EVDHMYNSPS AAAAFMSDAQ  360
YSVVPSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007014105.20.0PREDICTED: zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-134COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A061GXB20.0A0A061GXB2_THECC; Zinc finger protein CONSTANS-LIKE 5, putative
STRINGEOY317240.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-131CONSTANS-like 5
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]