PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG038379t1

Common Name

TCM_038379

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

CPP

Protein Properties

Length: 941aa MW: 101567 Da PI: 5.774

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG038379t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.1	2.3e-15	530	568	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkk+kClk+YC+Cfaag +C++ C+C++C+N+ e Thecc1EG038379t1 530 CKRCNCKKTKCLKLYCDCFAAGIYCADPCSCQGCFNRPE 568 89**********************************876 PP
2	TCR	48.6	1.6e-15	616	654	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCk+s ClkkYCeC++a++ Cs C+Ce+CkN Thecc1EG038379t1 616 RHKRGCNCKRSMCLKKYCECYQANVGCSIGCRCEGCKNV 654 589***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.6E-16	528	569	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.793	529	656	IPR005172	CRC domain
Pfam	PF03638	2.4E-11	531	566	IPR005172	CRC domain
SMART	SM01114	1.9E-17	616	657	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.1E-11	618	653	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 941 aa Download sequence Send to blast
MDSPEPSKAP ISSSSAAASI SASSPVQESP FSNYISSLSP IKHDKVPHVA QGFLGLNSPP 60 LVFTSPHINT LRRPQSSSVE VSQNGEGDKK NIDGPGSLER SVSELQQGLI TDIKKEDDTK 120 DSVSVQPSSS SGCVDEYLAD PVEADCANSE YFINLNCKES KNAFQSSVNG LLETKNLKFA 180 GKNDVGREID AAQLLSGQSE EGLERKLTSH VKPVKIEDEQ HAGQVKSDEC PEFGSDMFDL 240 SSQGKECKNL DAQKVVEDHE DRCDGFLQLL PGSLQRVQEY EDFAENFEGV AEVTVDSMTN 300 DLEASEHQRG MSRRCLQFGD AQPEATANCS SSSLANDMIT SRSVATTSET EGLGLSHVDL 360 SVISRKRQLV NLSQLAINMI PQHYGEKSSL TVSKPSGIGL HLNSIVNAIP MGRGGTASMK 420 LAVDSMGIQG IKSASVMSCQ SMENMQSCSD AFEKVLAAPQ DGTLEAKACV IPGSAASESL 480 CTMESIDCQT TLHRKRELSS EHGDSNEMFN QQSPKKKRKK SSNSTDGEGC KRCNCKKTKC 540 LKLYCDCFAA GIYCADPCSC QGCFNRPEYE DTVLETRQQI ESRNPLAFAP KIVQPVTEFP 600 VTSREDGNWK TPSSARHKRG CNCKRSMCLK KYCECYQANV GCSIGCRCEG CKNVFGKKED 660 YCVTEEIVNR GGGEISESTV AAKKDFLNSD LCDPHYLTPL TPSFQCSDHG KNAPKSRLLS 720 RRCLPSPESD LTVLAKSPRS PRTSDSNDML LETSKENLDV GSYCEGINYN NADVLGDGCH 780 HTPLPNHPSI ILGSTSSKAR ELTSLSRFPL GPRSGCLSSG GSLRWRSSPI TPMSSLDGTK 840 NLQGLDSDGL SDILEDDTPE ILKDTSTPNK SVKTSSPNGK RVSPPHNLLQ LGSSSSGPLR 900 SGRKFILKAV PSFPPLTPCI DLKGSSNQNR SSCQENSSND *

Sequence ? help Back to Top

Protein Sequence Length: 941 aa Download sequence Send to blast

MDSPEPSKAP ISSSSAAASI SASSPVQESP FSNYISSLSP IKHDKVPHVA QGFLGLNSPP  60
LVFTSPHINT LRRPQSSSVE VSQNGEGDKK NIDGPGSLER SVSELQQGLI TDIKKEDDTK  120
DSVSVQPSSS SGCVDEYLAD PVEADCANSE YFINLNCKES KNAFQSSVNG LLETKNLKFA  180
GKNDVGREID AAQLLSGQSE EGLERKLTSH VKPVKIEDEQ HAGQVKSDEC PEFGSDMFDL  240
SSQGKECKNL DAQKVVEDHE DRCDGFLQLL PGSLQRVQEY EDFAENFEGV AEVTVDSMTN  300
DLEASEHQRG MSRRCLQFGD AQPEATANCS SSSLANDMIT SRSVATTSET EGLGLSHVDL  360
SVISRKRQLV NLSQLAINMI PQHYGEKSSL TVSKPSGIGL HLNSIVNAIP MGRGGTASMK  420
LAVDSMGIQG IKSASVMSCQ SMENMQSCSD AFEKVLAAPQ DGTLEAKACV IPGSAASESL  480
CTMESIDCQT TLHRKRELSS EHGDSNEMFN QQSPKKKRKK SSNSTDGEGC KRCNCKKTKC  540
LKLYCDCFAA GIYCADPCSC QGCFNRPEYE DTVLETRQQI ESRNPLAFAP KIVQPVTEFP  600
VTSREDGNWK TPSSARHKRG CNCKRSMCLK KYCECYQANV GCSIGCRCEG CKNVFGKKED  660
YCVTEEIVNR GGGEISESTV AAKKDFLNSD LCDPHYLTPL TPSFQCSDHG KNAPKSRLLS  720
RRCLPSPESD LTVLAKSPRS PRTSDSNDML LETSKENLDV GSYCEGINYN NADVLGDGCH  780
HTPLPNHPSI ILGSTSSKAR ELTSLSRFPL GPRSGCLSSG GSLRWRSSPI TPMSSLDGTK  840
NLQGLDSDGL SDILEDDTPE ILKDTSTPNK SVKTSSPNGK RVSPPHNLLQ LGSSSSGPLR  900
SGRKFILKAV PSFPPLTPCI DLKGSSNQNR SSCQENSSND *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	8e-18	531	654	12	121	Protein lin-54 homolog
5fd3_B	8e-18	531	654	12	121	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	515	519	KKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007013826.2	0.0	PREDICTED: CRC domain-containing protein TSO1
Refseq	XP_007013827.2	0.0	PREDICTED: CRC domain-containing protein TSO1
Refseq	XP_017983279.1	0.0	PREDICTED: CRC domain-containing protein TSO1
TrEMBL	A0A061GNJ0	0.0	A0A061GNJ0_THECC; Tesmin/TSO1-like CXC domain-containing protein, putative isoform 1
STRING	EOY31445	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15196	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	3e-60	TESMIN/TSO1-like CXC 2

Link Out ? help Back to Top
Phytozome	Thecc1EG038379t1
Entrez Gene	18588985

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]