PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG038042t1
Common NameTCM_038042
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 540aa    MW: 61394.4 Da    PI: 6.7455
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG038042t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.2e-0795117427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       ++C f++  G+C+ GdrC+F Hgp
  Thecc1EG038042t1  95 VPCYFYFN-GFCNKGDRCSFLHGP 117
                       69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.3331241IPR000571Zinc finger, CCCH-type
PfamPF156639.3E-111370No hitNo description
SMARTSM003560.00851340IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.7794369IPR000571Zinc finger, CCCH-type
SMARTSM003560.934568IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-492117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.42792118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-593116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-696119IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-496117IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MQSINIMEEE FLKRNTDCVY FLASPLTCKK GIDCEYRHSE IARLNPRDCW YWLAGNCINP  60
TCGFRHPPLD GHTQVSSESA ALPYQCSAPA CKTNVPCYFY FNGFCNKGDR CSFLHGPDDN  120
AITGNALKTD ALPMDQKKSF ENDAGAAPTE RHPNPSKMAP KPSKEMGAQL KEDLQQSNPK  180
TMPQKSVSPK MSVIEFEESV FVESGSLLLK DGITESRSPI CTDKSSEEQV DDHVDPEERW  240
ESSPGFDVLV DNKSEDLDYE NDSEYLPVPE EEQMEHFLSY DYEDSVQHEA RYPKVELPHD  300
RDVYDAYEGS DNEFISDNAR NPPAYPIDRR LDSIFIHKRR RLSPELSDDE QMGDDLRDYL  360
SKRRVVEGNP PNFLSRMSEY SHLIGRSSKR PQRYIMGRKL RGRLASKVGK HSFESIGDQG  420
YFSNGTNRRG WLKRLEPKNS TRRSYREKWL PRRKSVSSEV SRNLISRERK STHASTAFTG  480
PKTLAQIKEE KKKTEENGGK MRHSGRTALA DFLGPKPLSE ILKDKGRLDT VRDGNSSSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337341KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007013386.20.0PREDICTED: zinc finger CCCH domain-containing protein 34
TrEMBLA0A061GM910.0A0A061GM91_THECC; Nucleic acid binding protein, putative
STRINGEOY310050.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16432710
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]