PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG038030t2 | ||||||||
Common Name | TCM_038030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C3H | ||||||||
Protein Properties | Length: 348aa MW: 38670.1 Da PI: 7.0455 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4e-07 | 87 | 111 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f+ GtC+ G+ C+FaHg Thecc1EG038030t2 87 FKTRMCAKFRL-GTCRNGEGCNFAHG 111 69*********.*************8 PP | |||||||
2 | zf-CCCH | 28.4 | 2.9e-09 | 148 | 170 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f+ + +C+yGdrC+F H Thecc1EG038030t2 148 MKLCKKFYNGEECPYGDRCNFLH 170 689******66************ PP | |||||||
3 | zf-CCCH | 41.2 | 2.8e-13 | 230 | 256 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG+C++G++C+FaHg+ Thecc1EG038030t2 230 WKTKLCTKWETTGHCPFGEKCHFAHGQ 256 8************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-14 | 84 | 119 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.37E-8 | 85 | 117 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.22 | 86 | 113 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.067 | 86 | 112 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-7 | 145 | 172 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8E-4 | 145 | 172 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.117 | 145 | 173 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.8E-9 | 148 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.3E-7 | 148 | 170 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-17 | 226 | 260 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.19E-10 | 228 | 260 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.807 | 229 | 257 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.3E-6 | 229 | 256 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-10 | 230 | 256 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MSYPESCSSF MRLPQSTYAG SDAIGIWPEF AMNDGQFDQH SEFEQQPPFK RPRHSEDSQS 60 NVVHCLPTNS RMPLNPPVNK GTSNIFFKTR MCAKFRLGTC RNGEGCNFAH GIEDLRQPPP 120 NWQELVGGRD EERPSGNWDD DQKIIHRMKL CKKFYNGEEC PYGDRCNFLH EDPSKFRDDM 180 GRFRESSAIS IGTTGPPGGH GTASDQSEGN RPLNSASSDA FRGNMKPVYW KTKLCTKWET 240 TGHCPFGEKC HFAHGQSELQ GIGGRVDGDF GNTCSGLTRT GSILTKVHNL PANDAPSVTA 300 SVPSLNEEAQ AKKCLFKWKG PRKINSIYGD WLDDLPLVPN MPSQVES* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007013371.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 39 | ||||
Swissprot | Q9LT81 | 1e-103 | C3H39_ARATH; Zinc finger CCCH domain-containing protein 39 | ||||
TrEMBL | A0A061GN87 | 0.0 | A0A061GN87_THECC; Zinc finger family protein, putative isoform 1 | ||||
STRING | EOY30990 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-103 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG038030t2 |
Entrez Gene | 18588721 |
Publications ? help Back to Top | |||
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