PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG038030t1
Common NameTCM_038030
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 348aa    MW: 38670.1 Da    PI: 7.0455
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG038030t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54e-0787111126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +kt+ C  f+  GtC+ G+ C+FaHg
  Thecc1EG038030t1  87 FKTRMCAKFRL-GTCRNGEGCNFAHG 111
                       69*********.*************8 PP
2zf-CCCH28.42.9e-09148170325
                       S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                       ++lC+ f+ + +C+yGdrC+F H
  Thecc1EG038030t1 148 MKLCKKFYNGEECPYGDRCNFLH 170
                       689******66************ PP
3zf-CCCH41.22.8e-13230256127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +kt+lC  +  tG+C++G++C+FaHg+
  Thecc1EG038030t1 230 WKTKLCTKWETTGHCPFGEKCHFAHGQ 256
                       8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.6E-1484119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-885117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2286113IPR000571Zinc finger, CCCH-type
SMARTSM003560.06786112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-7145172IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4145172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117145173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-9148171IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-7148170IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-17226260IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-10228260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.807229257IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6229256IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-10230256IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSYPESCSSF MRLPQSTYAG SDAIGIWPEF AMNDGQFDQH SEFEQQPPFK RPRHSEDSQS  60
NVVHCLPTNS RMPLNPPVNK GTSNIFFKTR MCAKFRLGTC RNGEGCNFAH GIEDLRQPPP  120
NWQELVGGRD EERPSGNWDD DQKIIHRMKL CKKFYNGEEC PYGDRCNFLH EDPSKFRDDM  180
GRFRESSAIS IGTTGPPGGH GTASDQSEGN RPLNSASSDA FRGNMKPVYW KTKLCTKWET  240
TGHCPFGEKC HFAHGQSELQ GIGGRVDGDF GNTCSGLTRT GSILTKVHNL PANDAPSVTA  300
SVPSLNEEAQ AKKCLFKWKG PRKINSIYGD WLDDLPLVPN MPSQVES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007013371.10.0PREDICTED: zinc finger CCCH domain-containing protein 39
SwissprotQ9LT811e-103C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A061GN870.0A0A061GN87_THECC; Zinc finger family protein, putative isoform 1
STRINGEOY309900.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-103C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]