PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037970t1
Common NameTCM_037970
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family G2-like
Protein Properties Length: 468aa    MW: 50783.7 Da    PI: 7.2686
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037970t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.88.8e-32249304156
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                       k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Thecc1EG037970t1 249 KARRCWSPDLHRRFVNALQLLGGSQVATPKQIRELMKVEGLTNDEVKSHLQKYRLH 304
                       68****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.402246306IPR017930Myb domain
SuperFamilySSF466891.4E-16247307IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-28247307IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-27249304IPR006447Myb domain, plants
PfamPF002491.2E-6251302IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MASPSELTLD CKPHSYSMLL KSFGDQQIDQ TQKLEEFLSR LEEERLKIDA FKRELPLCMQ  60
LLTNAVEASR QQLLACRANH GSRPVLEEFM PLKNSSSENS EKSQNISDKA NWMTTAQLWS  120
QAGNETKPQS SITSPKETEI GFNVSPKLAL DTKPRNGGAF LPFTKERNSC PGSALQALPD  180
LALASANKDM EDKRCSDTEN GMSCQRRENS GKVSNGVVVI EQGRGTANTI DGQTANTNPS  240
ANTTQPHRKA RRCWSPDLHR RFVNALQLLG GSQVATPKQI RELMKVEGLT NDEVKSHLQK  300
YRLHTRRPSP SPQATGAPTP PLVVLGGIWV PPEYATAAAA AYSGAPTLYG THHPAAAHAP  360
PHFCAPPVPQ EFYTAAATPA PPPPQLHHHA IHHQLHMYKA NSQAHSSPES DVRGAGDRSE  420
SIEDGKSESS SWKGESGDNG GAGERKGLAA LREEGEESNG SEITLKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-14249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-14249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A5e-14249302154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-14249302154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-14249302154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-14249302154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-14249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-14249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-14249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-14249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-14249302255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-14249302255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007013309.10.0PREDICTED: myb family transcription factor EFM
SwissprotQ9ZQ851e-137EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A061GNE10.0A0A061GNE1_THECC; Homeodomain-like superfamily protein
STRINGEOY309280.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71342843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-117G2-like family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]