PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG037852t1

Common Name

TCM_037852

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

CPP

Protein Properties

Length: 612aa MW: 65183.2 Da PI: 7.8158

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG037852t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	44.4	3.2e-14	125	164	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C N+ e+ Thecc1EG037852t1 125 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCYNNVEN 164 89************************.******9875 PP
2	TCR	50.8	3.2e-16	209	248	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e Thecc1EG037852t1 209 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 248 589***********************************65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.5E-16	124	164	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	36.811	125	249	IPR005172	CRC domain
Pfam	PF03638	4.3E-11	126	161	IPR005172	CRC domain
SMART	SM01114	8.4E-20	209	250	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.2E-12	212	247	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 612 aa Download sequence Send to blast
MGEGEGEGGD FPPKKVQSDT ADFPAKKLAR QLDFTAGFGG VSSGGVVLPE HPQSTQGIAT 60 AAAAAVTQQH QQQQQQQIKP PVIATTPVAA TQPPPLTTAS SRVVKPESPK AKPRPNELKD 120 GTPKKQKQCN CKHSRCLKLY CECFASGIYC DGCNCVNCYN NVENEAARRD AVEATLERNP 180 NAFRPKIASS PHGARDCREE AGEGLMLGKH NKGCHCKKSG CLKKYCECFQ ANILCSENCK 240 CMDCKNFEGS EERQALFHGD HANNMAYIQQ AANAAITGAI GSSGYASLPV SKKRKGQELF 300 FGSTAKDPSV HRLGQFPQAN HIRASAPSSS LSSMPVSRAG ATAAVGPSKF TYRSLLADII 360 QKQDLRELCS VLVVLSGEAA KTLADQRSLT EKRAEDQTET SLASSTQDRL QSQKDSDAEK 420 TTADDCSSAN QADKAGPEDS SSDGADMPKG RPMSPGTLAL MCDEQDTMFM AAASPNGIMG 480 HGCSTSSQLP YGQGMTEIYA EQERIVLTKF RDCLNRLITF GDIKETQCSS LARTEIVSQR 540 GPLSNGTEIV RTEAGNRQGS ITNGVAKTVS PLTVKTSQMA AAVVTTANND LPRVPSLPEN 600 GDAKTKAEKQ M*

Sequence ? help Back to Top

Protein Sequence Length: 612 aa Download sequence Send to blast

MGEGEGEGGD FPPKKVQSDT ADFPAKKLAR QLDFTAGFGG VSSGGVVLPE HPQSTQGIAT  60
AAAAAVTQQH QQQQQQQIKP PVIATTPVAA TQPPPLTTAS SRVVKPESPK AKPRPNELKD  120
GTPKKQKQCN CKHSRCLKLY CECFASGIYC DGCNCVNCYN NVENEAARRD AVEATLERNP  180
NAFRPKIASS PHGARDCREE AGEGLMLGKH NKGCHCKKSG CLKKYCECFQ ANILCSENCK  240
CMDCKNFEGS EERQALFHGD HANNMAYIQQ AANAAITGAI GSSGYASLPV SKKRKGQELF  300
FGSTAKDPSV HRLGQFPQAN HIRASAPSSS LSSMPVSRAG ATAAVGPSKF TYRSLLADII  360
QKQDLRELCS VLVVLSGEAA KTLADQRSLT EKRAEDQTET SLASSTQDRL QSQKDSDAEK  420
TTADDCSSAN QADKAGPEDS SSDGADMPKG RPMSPGTLAL MCDEQDTMFM AAASPNGIMG  480
HGCSTSSQLP YGQGMTEIYA EQERIVLTKF RDCLNRLITF GDIKETQCSS LARTEIVSQR  540
GPLSNGTEIV RTEAGNRQGS ITNGVAKTVS PLTVKTSQMA AAVVTTANND LPRVPSLPEN  600
GDAKTKAEKQ M*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-31	117	258	2	132	Protein lin-54 homolog
5fd3_B	2e-31	117	258	2	132	Protein lin-54 homolog
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a role in development of both male and female reproductive tissues. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00045	PBM	Transfer from AT4G29000	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007013127.2	0.0	PREDICTED: LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5
Swissprot	Q9SZD1	0.0	TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBL	A0A061GMK6	0.0	A0A061GMK6_THECC; Tesmin/TSO1-like CXC domain-containing protein
STRING	EOY30746	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1783	28	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	0.0	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Thecc1EG037852t1
Entrez Gene	18588573

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]