PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037840t1
Common NameTCM_037840
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 357aa    MW: 38925.3 Da    PI: 7.0474
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037840t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000472202581255
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Thecc1EG037840t1 220 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 258
                       6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.49208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-10218268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.88E-6218262No hitNo description
Gene3DG3DSA:4.10.280.103.1E-7222264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNRGVLQSST VQQMMAGNPN WWSINSMRPP THHQQPSPFL PPPPTFFPQY TPTSSSSSSS  60
SSSLPIPSWH DNQELPESWS QLLLGGFVGE EEKGGIGQFQ VQVPKKVENW EEQALHQASN  120
ASVVDVKQEN SASSYVYGHA NEDFHQATKP AWSHQIMPAS SPKSCVTSFS SNMLDFSGNK  180
ADVRHPPPDR SSECNSTATG GTLKKARVQP SATQSTFKVR KEKLGDRITA LHQLVSPFGK  240
TDTASVLLEA IGYIRFLQSQ IEALSLPYLG SGSGNMRQQQ SVQGERNCIF PEDPGQLLND  300
NCMKRKGGPD QQDSHEEPKK DLRSRGLCLV PVSCTLQVGS DNGADYWAPA LGAGFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007013110.20.0PREDICTED: transcription factor bHLH68
SwissprotQ8S3D11e-109BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A061GUE60.0A0A061GUE6_THECC; Basic helix-loop-helix DNA-binding superfamily protein
STRINGEOY307290.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-98bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]