PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037730t1
Common NameTCM_037730
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 405aa    MW: 45012.7 Da    PI: 7.1296
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037730t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.5e-08137157526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C++f++ G C+ Gd+C FaHg
  Thecc1EG037730t1 137 ACPDFRK-GNCRKGDSCEFAHG 157
                       7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.0884121IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6132158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08133159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-6136159IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-6137157IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.681167191IPR000571Zinc finger, CCCH-type
SMARTSM003569.1167190IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MMLGETHRPN PTVLVPPWPN LEDDQTPEVY SPLKYNVADN HLNNSGTPFY LQEALAALQR  60
YLPSNEPDVE SDSELSGLDN PDSPVDAYSC DHFRMFEFKV RRCARGRSHD WTECPYAHPG  120
EKARRRDPRK YHYSGTACPD FRKGNCRKGD SCEFAHGVFE CWLHPARYRT QPCKDGPNCR  180
RRVCFFAHTP DQLRVVNSAD SYDVSPSCAK TLTFWSSPGS GSPPVSPRAE SSPPVSPMAQ  240
SLSRSLGSAS INEMVASLRN LQLGKVKSLP SSWPTQVGCC SPSGFGSPRG AVIRPGFCSL  300
PSTPTRNLTR PGIGYLDFWD NGCEEEPVME RVESGRDLRA KMFEKLSKEN SLGRVNPGQC  360
SGGPDVDWVS DLVKAAYALV ILQQMNAVYI LFKIDLRMTD YICE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017983671.10.0PREDICTED: zinc finger CCCH domain-containing protein 20
SwissprotQ9M0G21e-157C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A061GL140.0A0A061GL14_THECC; Zinc finger C-x8-C-x5-C-x3-H type family protein, putative
STRINGEOY305700.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-151C3H family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  3. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]