PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037653t2
Common NameTCM_037653
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 608aa    MW: 67252.9 Da    PI: 7.0732
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037653t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.2e-063223361226
                       TS--TTTTT-SS-SS CS
           zf-CCCH  12 tGtCkyGdrCkFaHg 26 
                       +G C++G++C+F H+
  Thecc1EG037653t2 322 SGSCPRGEKCNFQHD 336
                       69************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd073801.04E-447233No hitNo description
PROSITE profilePS5010313.835310338IPR000571Zinc finger, CCCH-type
SMARTSM003560.045312337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-6314338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5314339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.493342370IPR000571Zinc finger, CCCH-type
SMARTSM003560.12344369IPR000571Zinc finger, CCCH-type
PfamPF046773.2E-36386501IPR006768Cwf19-like, C-terminal domain-1
SuperFamilySSF541979.36E-6389466IPR011146HIT-like domain
PfamPF046762.1E-17521604IPR006767Cwf19-like protein, C-terminal domain-2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MAPPRILLCG DVLGRPNQLF KRFNSVNKSA GPFDSLFCVG QFFPDETDRL DELMDYIEGR  60
AQIPLPTYFI GDYGVGAAKV LSAASKNSAN QGFKMDGFKI CDNLFWLKGS GKFTLHGLSV  120
AYLSGRQLSS GQQFGSYSED DIDALRAFAE EPGIVDLFLS NEWPSGVTNR ATASDIPAGM  180
SNSSGSDSTV SQLVAEIKPR YHIAGTKGAF YAREPYSNVD AVHVTRFLGL ASVGNKEKQK  240
FLHALSPTPS SAMSAAEISA KPPNTTLSPY TLADQVDRPK EATMRAGDNA PDSQYWRYDV  300
SNKRQKHGNG DGNKVCFKFI SSGSCPRGEK CNFQHDIDAR EQFLRGVCLD FIIKGKCEKG  360
PDCNFKHSLQ DEGESYSRKR PGSGNNSANR LKECWFCLSS PNVEIHLVTS IGENFYCALA  420
KGPLVQDHVL LIPVEHLPNT LCLSADSEIE LGKFQNSLKM YYKNQGKEAV FFEWISKRGT  480
HANLQAVPVP SSKAAALKDI FNLAAEKLGF EFVTKKFNNN SEGRKWLKTQ FDKNFSCFYV  540
ELPEGSILSH LVEENEKFPA QFGREVLAGL LNMADRADWR NCTLGKEEET KLAENFKKLF  600
DVFDPSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6id0_U3e-12388604669887CWF19-like protein 2
6id1_U3e-12388604669887CWF19-like protein 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012827.20.0PREDICTED: zinc finger CCCH domain-containing protein 64 isoform X1
SwissprotQ84WU90.0C3H64_ARATH; Zinc finger CCCH domain-containing protein 64
TrEMBLA0A061GLM80.0A0A061GLM8_THECC; CwfJ-like family protein / zinc finger (CCCH-type) family protein isoform 2
STRINGEOY304450.0(Theobroma cacao)
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]