PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG037650t1 | ||||||||
Common Name | TCM_037650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | LBD | ||||||||
Protein Properties | Length: 240aa MW: 26569.2 Da PI: 7.564 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 107.4 | 1.1e-33 | 12 | 112 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaC+++rr+C ++C lapyfpa++ +f+n+ k FG sn++k+++++++++r++a++s+++e++ar++ P +G++g+i++l++ le ++e Thecc1EG037650t1 12 ACAACRHHRRRCHQSCELAPYFPASKYDEFKNALKHFGLSNIVKIMSTVRPDQRQAAAESILMEGNARLDHPAHGCLGIIRNLHSLLEIYESE 104 7******************************************************************************************** PP DUF260 94 lallkeel 101 la+++++l Thecc1EG037650t1 105 LAAVNQQL 112 ****9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.112 | 11 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-31 | 12 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MNGEGRGGNP PACAACRHHR RRCHQSCELA PYFPASKYDE FKNALKHFGL SNIVKIMSTV 60 RPDQRQAAAE SILMEGNARL DHPAHGCLGI IRNLHSLLEI YESELAAVNQ QLAVFKASSS 120 STPQPSQPEI DPLVAKMFNE GDNSRWVNLE ADATINSVPS DSRGKQPVRP DEEARDDEAD 180 DIFMEKQKTP SFCRPNLLET KGAISVIRIS FFLPTAQLFF PAVHLPLTGR RKLDHKLSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-19 | 13 | 112 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-19 | 13 | 112 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021275719.1 | 1e-125 | LOB domain-containing protein 22-like | ||||
TrEMBL | A0A061GLM3 | 1e-178 | A0A061GLM3_THECC; LOB domain-containing protein 22, putative | ||||
STRING | EOY30441 | 1e-179 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6498 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 5e-21 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG037650t1 |
Entrez Gene | 18588388 |
Publications ? help Back to Top | |||
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