PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037645t1
Common NameTCM_037645
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 524aa    MW: 58643.2 Da    PI: 8.0799
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037645t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.6e-11347392555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + Er+RR+++N++f  Lr+llP+      +K +Ka++L  A e++ sLq
  Thecc1EG037645t1 347 HMMSERKRREKLNESFIALRSLLPSG-----TKKDKASVLCSAREHLTSLQ 392
                       8899*********************8.....7*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.19E-10340393No hitNo description
SuperFamilySSF474594.71E-15341410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.729342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-12346408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-8347392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-11348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MDAVFHLDEA SRAEFLQLLM HSTGCTYICL WSYIHQANSC LMCWDGCYNE ESNQPRALRL  60
FLEYRQLVFP LENDNGLVPG FAFRNNRPYI ELGESELQNR IAQQTQRQFY GEAGIKTAVF  120
MGCRSGEIEL GSSNVVQLNM EMEMRGFFPE DFSRRSPVGD QLPQPQPTDP NRPSSSSSSL  180
RSLSTGSPDS SLIFTIPSAS RPQVPTDATP SSLQAISSSI TDQHQQAMQA LSQIRSNIQL  240
PTLESEDAAM TRAILAVLTS PSSSSSSTSH QPQQNQNLPY NDYQLNPKAS AFKRYAASML  300
GAPTTPARAS LRAQSMQKRA VLFYGKLNLA RREQQLRIRP TSNQLHHMMS ERKRREKLNE  360
SFIALRSLLP SGTKKDKASV LCSAREHLTS LQAHIVELNR RNQLLEAQLL PSREAVGGEV  420
TGSSNERFSV RITPVPESTS EQRIMDLRVS VRGERPIVDV LIHLLQFLKL DRNVSLLSIE  480
ANTHITDAGS VNNFNLRLRI EGNGWDEYTF QEAVRRLVAD LAQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350355ERKRRE
2351356RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982851.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLA0A061GTG00.0A0A061GTG0_THECC; Basic helix-loop-helix DNA-binding family protein, putative
STRINGEOY304290.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-77bHLH family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]