PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG037639t3

Common Name

TCM_037639

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C3H

Protein Properties

Length: 963aa MW: 105231 Da PI: 7.7513

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG037639t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.5	8.3e-07	512	531	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C +++ G+C +Gd C F+H Thecc1EG037639t3 512 CINYMTKGFCGRGDDCLFSH 531 9******************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.169	452	479	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.89E-6	453	477	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.031	453	478	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.178	481	508	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.9E-4	481	507	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.056	509	533	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.98E-5	510	534	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.009	511	534	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.7E-4	512	532	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 963 aa Download sequence Send to blast
MFTPHRRSHL RSGTYHNLVR LISLCYGDSP LATAPPIIPV HRTPDNGSKQ GEPGGNDIGE 60 PGESIVQNSS EPANLPAQGG TVVDADFKGA VFKDSGFSDT QMVIDEIEQI MQIEESQNFV 120 NGNDLKVCSS TEGTGFQDGE IGPEQSLMNE LENIMKGNED YDNRNNCLAT SLGQNLGDNC 180 LGVSMNNQEE RIELPLVVAE ESGTAVQPQV FMEGDNQKII EAFDFSSDKS LIVEVSKSSE 240 KAEDQSSLLK SNSMHEKIGI QQKEMELEKF VSSNDRMPSP GQMVENGELE EGEIFGDIQL 300 VNESVDILLE DAVVSEKKGE EKQVDPFDDK GLHCNEESTA NNKDSEITSF NMNIAQIANR 360 VSDVELEGSE RDHMVSELGR MRRKKGTKQS GDENHIIKSK KKKDDGVCNK KNQGSNLAEK 420 KEKKKRNKRK KRAEKNQQLG VKRLKLQTVL KPKSVTYCRH YLKGRCYEGE KCKYSHDTVP 480 LTKSQPCSHF ARQSCMKGDE CPFDHQLSKY HCINYMTKGF CGRGDDCLFS HKMSPEGGVA 540 SLSSARELQL KSSLHGDSEM RLSISKNVDA SSCSIRAFSQ KSKEQIVAGT PTKTPDLACK 600 GVNSLFVSKS SMAESSKLNR GSSSQKMKES GEVGIQSNLS TSGVNSPCAS KPSLKMNKSG 660 RLGIQANQSE SGTIQNVNDS STRKTEVVPR GINFLSFGKS SLEDTTSKVS LALNRGVGCK 720 QHPSENEGDR GKLSNQTTQS TSSTDQKKTH PAVVPLGINF LSLGKSGNSR SNEASMPSSS 780 DIVNNGSLQK SNYASDKRRN SSEISYRSPV SPQTSGQSSE WLSHKNTPNT AQKAIISTLA 840 FAKKFDDVNS QSFHESQHLS DKQYSSNPIP WKMAAYPLAL GQSSEKISHK NTPNSVQKAL 900 MSTLAFAAKF ESGMKKNQSA VSTGVKSETR DSRNDEGSKS DLAETSKLLD ILSSVGRKIK 960 QM*

Sequence ? help Back to Top

Protein Sequence Length: 963 aa Download sequence Send to blast

MFTPHRRSHL RSGTYHNLVR LISLCYGDSP LATAPPIIPV HRTPDNGSKQ GEPGGNDIGE  60
PGESIVQNSS EPANLPAQGG TVVDADFKGA VFKDSGFSDT QMVIDEIEQI MQIEESQNFV  120
NGNDLKVCSS TEGTGFQDGE IGPEQSLMNE LENIMKGNED YDNRNNCLAT SLGQNLGDNC  180
LGVSMNNQEE RIELPLVVAE ESGTAVQPQV FMEGDNQKII EAFDFSSDKS LIVEVSKSSE  240
KAEDQSSLLK SNSMHEKIGI QQKEMELEKF VSSNDRMPSP GQMVENGELE EGEIFGDIQL  300
VNESVDILLE DAVVSEKKGE EKQVDPFDDK GLHCNEESTA NNKDSEITSF NMNIAQIANR  360
VSDVELEGSE RDHMVSELGR MRRKKGTKQS GDENHIIKSK KKKDDGVCNK KNQGSNLAEK  420
KEKKKRNKRK KRAEKNQQLG VKRLKLQTVL KPKSVTYCRH YLKGRCYEGE KCKYSHDTVP  480
LTKSQPCSHF ARQSCMKGDE CPFDHQLSKY HCINYMTKGF CGRGDDCLFS HKMSPEGGVA  540
SLSSARELQL KSSLHGDSEM RLSISKNVDA SSCSIRAFSQ KSKEQIVAGT PTKTPDLACK  600
GVNSLFVSKS SMAESSKLNR GSSSQKMKES GEVGIQSNLS TSGVNSPCAS KPSLKMNKSG  660
RLGIQANQSE SGTIQNVNDS STRKTEVVPR GINFLSFGKS SLEDTTSKVS LALNRGVGCK  720
QHPSENEGDR GKLSNQTTQS TSSTDQKKTH PAVVPLGINF LSLGKSGNSR SNEASMPSSS  780
DIVNNGSLQK SNYASDKRRN SSEISYRSPV SPQTSGQSSE WLSHKNTPNT AQKAIISTLA  840
FAKKFDDVNS QSFHESQHLS DKQYSSNPIP WKMAAYPLAL GQSSEKISHK NTPNSVQKAL  900
MSTLAFAAKF ESGMKKNQSA VSTGVKSETR DSRNDEGSKS DLAETSKLLD ILSSVGRKIK  960
QM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	382	402	RKKGTKQSGDENHIIKSKKKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007012797.2	0.0	PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X1
TrEMBL	A0A061GLJ5	0.0	A0A061GLJ5_THECC; Uncharacterized protein isoform 1
STRING	EOY30417	0.0	(Theobroma cacao)

Link Out ? help Back to Top
Phytozome	Thecc1EG037639t3
Entrez Gene	18588376

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]