PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037620t1
Common NameTCM_037620
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 338aa    MW: 37983.1 Da    PI: 9.0039
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037620t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.8e-13556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      +++WT+eE+e l  +v+++G+g+Wk+I r          R+  ++k++w+++
  Thecc1EG037620t1  5 KQKWTAEEEEALRAGVAKYGKGNWKSIQRDPElspflFARSNIDLKDKWRNL 56
                      79****************************999999977**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.759161IPR017930Myb domain
SuperFamilySSF466891.58E-15257IPR009057Homeodomain-like
SMARTSM007175.2E-8459IPR001005SANT/Myb domain
PfamPF002499.1E-10556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-14556IPR009057Homeodomain-like
CDDcd116601.22E-20656No hitNo description
PROSITE profilePS5150420.906170250IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467857.62E-11171259IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-11173257IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.2E-7173244IPR005818Linker histone H1/H5, domain H15
SMARTSM005261.1E-7174245IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGNPKQKWTA EEEEALRAGV AKYGKGNWKS IQRDPELSPF LFARSNIDLK DKWRNLSGGS  60
GGHGSREKSR TSKPKANSDG STPQSSVPVK RNALSKPVAD DSSKSFASKY AFLLSLXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXMHLF GHFFFVITIC VLCCLTLLYN CSRYNEMIIE  180
AVSALKEPNG SDNRAIISYI EIDFEILSLI IPEQRQEVPQ SFRKQLCSRL KRLVAVEKLE  240
KVQNRYKMRK DETFGTKTPS PNQKGMRLKH VTCDSVEEAS VTAAYLIAEA ENKSFVAAEA  300
VKEAERVSKM AEDMDSLLQL AKEIFETCSR GEILLMA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982075.11e-100PREDICTED: telomere repeat-binding factor 4
TrEMBLA0A061GKI80.0A0A061GKI8_THECC; Homeodomain-like/winged-helix DNA-binding family protein, putative
STRINGEOY303900.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-26MYB_related family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]