PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG037576t6

Common Name

TCM_037576

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YA

Protein Properties

Length: 272aa MW: 29972.3 Da PI: 8.4836

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG037576t6	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.8	3.1e-32	114	170	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh hAl+R RgsgGrF Thecc1EG037576t6 114 DGPIYVNAKQYHGILRRRQYRAKLEAQNKL-VKARKPYLHESRHLHALNRVRGSGGRF 170 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	7.4E-36	112	173	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.271	113	173	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.8E-27	116	170	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.0E-23	116	138	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	118	138	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.0E-23	147	170	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
GGRVSREGTC LSSFQQNNSL LLLHASSDPI GQDESCGKDI EGQMKPVFLL NNPNTVFSPS 60 HPNYNHSMAY ARNPYADAYF GGLFTPYGQQ AIIQPQVAGS APTRIPLPLD LDEDGPIYVN 120 AKQYHGILRR RQYRAKLEAQ NKLVKARKPY LHESRHLHAL NRVRGSGGRF LPTKKLQQCD 180 PTFNTSSHCI SDTSCSDQKN SRSEFESRCS HTAEYVGSST SCSDITSVSN SDGNFQQPEH 240 RFSDISPHVG SHMRNSGSMC NGIQHCASIV R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-19	116	175	4	63	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021276878.1	0.0	nuclear transcription factor Y subunit A-7-like isoform X2
TrEMBL	A0A061GMF1	0.0	A0A061GMF1_THECC; Nuclear transcription factor Y subunit A-3, putative isoform 6 (Fragment)
STRING	EOY30324	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	2e-42	nuclear factor Y, subunit A3

Link Out ? help Back to Top
Phytozome	Thecc1EG037576t6
Entrez Gene	18588323

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]